Alternatives and similar repositories for boltzmann-generators

Users that are interested in boltzmann-generators are comparing it to the libraries listed below

• noegroup / flowm
  Flow-matching for coarse graining of miniproteins.
  ☆19Updated 2 years ago
• transferable-samplers / transferable-samplers
  A repo for transferable sampling of molecular systems
  ☆18Updated last week
• flagshippioneering / flash_ipa
  Efficient factorized variant of the IPA module.
  ☆30Updated 2 weeks ago
• tiwarylab / simple-diffusion
  Demo of diffusion models #DDPM applied to molecular dynamics of small peptide
  ☆14Updated last year
• johnyang101 / pmpnndiff
  Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion
  ☆18Updated last year
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆46Updated 10 months ago
• Bitbol-Lab / DiffPALM
  Differentiable Pairing using Alignment-based Language Models
  ☆24Updated last year
• Minys233 / Dynaformer
  ☆32Updated last year
• petergroth / FLOP
  This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.
  ☆22Updated 2 years ago
• Profluent-Internships / ProCALM
  A conditionally adapted protein language model for the generation of enzymes
  ☆23Updated 10 months ago
• barricklab-at-jhu / SVD-of-MSAs
  This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…
  ☆11Updated last year
• tiwarylab / DDPM_REMD
  Denoising diffusion probabilistic models for replica exchange
  ☆24Updated 3 years ago
• leojklarner / context-guided-diffusion
  Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design
  ☆39Updated last year
• zanderharteveld / genesis
  protein backbone refinement
  ☆15Updated last year
• bjing2016 / scalar-fields
  Equivariant Scalar Fields for Molecular Docking with Fast Fourier Transforms
  ☆29Updated last year
• wwang2 / CoarseGrainingVAE
  Geometric super-resolution for molecular geometries
  ☆41Updated 3 years ago
• flagshippioneering / pi-rldif
  Code for RL-DIF
  ☆16Updated 3 months ago
• noegroup / ScoreMD
  A framework for training diffusion models with stable, self-consistent scores near the data distribution.
  ☆29Updated 2 months ago
• Marco-Peg / GEP
  ☆15Updated last year
• ASK-Berkeley / OM-TPS
  [ICML 2025] Repurposing pre-trained score-based generative models for transition path sampling by minimizing the Onsager-Machlup (OM) act…
  ☆18Updated 3 months ago
• Ferg-Lab / DiAMoNDBack
  DiAMoNDBack: Diffusion-denoising Autoregressive Model for Non-Deterministic Backmapping of Cα Protein Traces
  ☆19Updated 5 months ago
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆40Updated 2 weeks ago
• ai4protein / VenusX
  ☆13Updated 2 weeks ago
• prescient-design / holo-bench
  Benchmark for Biophysical Sequence Optimization Algorithms
  ☆20Updated 4 months ago
• Genentech / walk-jump
  Official repository for discrete Walk-Jump Sampling (dWJS)
  ☆53Updated last year
• vsomnath / flexdock
  Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)
  ☆50Updated 3 months ago
• hits-mli / gafl
  Geometric Algebra Flow Matching (GAFL) for Protein Backbone Generation
  ☆14Updated 3 months ago
• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆35Updated last year
• Croydon-Brixton / proteinmpnn_wrapper
  A thin wrapper around ProteinMPNN for convenient sampling without having to write out or consume files
  ☆11Updated last year
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆39Updated last year