Alternatives and similar repositories for LinearPartition

Users that are interested in LinearPartition are comparing it to the libraries listed below

• Rostlab / goPredSim
  ☆48Updated 9 months ago
• LinearFold / LinearTurboFold
  An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs
  ☆11Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated last year
• realbigws / Predict_Property
  Predict protein local properties using sequence or profile information.
  ☆23Updated 4 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• hendrixlab / bpRNA
  bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure
  ☆50Updated last year
• Doudna-lab / GARNET_DL
  ☆36Updated 8 months ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆49Updated last year
• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆17Updated 2 weeks ago
• gitter-lab / nn4dms
  Neural networks for deep mutational scanning data
  ☆69Updated 3 months ago
• walterlab-HMS / SPOC
  Code repository for the SPOC tool for scoring binary AF-M predicitons.
  ☆13Updated 4 months ago
• jaswindersingh2 / SPOT-RNA
  RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.
  ☆106Updated 3 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• kansil / PROBE
  Trainable representation analysis study repository
  ☆44Updated 3 years ago
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆33Updated 2 weeks ago
• jas-preet / SPOT-1D-Single
  The standalone version of SPOT-1D-Single available for public use for research purposes.
  ☆24Updated last year
• HannesStark / protein-localization
  Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…
  ☆67Updated 2 years ago
• lucian-ilie / DELPHI
  Deep learning protein-protein binding sites prediction
  ☆20Updated 2 years ago
• spetti / SMURF
  ☆132Updated 3 years ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆45Updated 2 years ago
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆41Updated 2 years ago
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆58Updated 2 months ago
• duolinwang / MusiteDeep_web
  This repository contains the stand-alone tool for MusiteDeep server
  ☆34Updated 4 years ago
• normandavey / AlphaFold2-IDR-complex-prediction
  ☆39Updated 4 years ago
• sokrypton / seqmodels
  ☆32Updated last month
• psipred / DMPfold
  De novo protein structure prediction using iteratively predicted structural constraints
  ☆60Updated 3 years ago
• oxpig / saab_plus
  ☆26Updated 5 years ago
• idptools / sparrow
  Next generation sequence parameter library for proteins
  ☆35Updated this week
• eternagame / EternaFold
  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
  ☆62Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆69Updated 8 years ago