LinearFold / LinearPartition

Related projects ⓘ

Alternatives and complementary repositories for LinearPartition

• LinearFold / LinearTurboFold
  An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs
  ☆11Updated 4 months ago
• Doudna-lab / GARNET_DL
  ☆29Updated 3 weeks ago
• Rostlab / goPredSim
  ☆43Updated last year
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆31Updated 2 years ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆78Updated 8 months ago
• biofold / ddgun
  predict stability change upon mutation
  ☆27Updated 4 months ago
• jaswindersingh2 / SPOT-RNA2
  Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…
  ☆25Updated 3 years ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆49Updated last year
• jertubiana / ProteinMotifRBM
  Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
  ☆20Updated 5 years ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆38Updated last month
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆83Updated last year
• realbigws / Predict_Property
  Predict protein local properties using sequence or profile information.
  ☆22Updated 4 years ago
• psipred / DMPfold
  De novo protein structure prediction using iteratively predicted structural constraints
  ☆55Updated 2 years ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆71Updated 6 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆56Updated 3 years ago
• hendrixlab / bpRNA
  bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure
  ☆43Updated last year
• mat10d / EvolvePro
  This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…
  ☆60Updated this week
• twoXes / awesome-structural-bioinformatics
  Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your co…
  ☆68Updated last year
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆16Updated 2 years ago
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆93Updated 10 months ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆81Updated 2 months ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆47Updated 2 weeks ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆26Updated last year
• GBLille / MassiveFold
  ☆56Updated this week
• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆44Updated 5 years ago
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆92Updated this week
• pfnet-research / GenerRNA
  ☆16Updated last month
• RNA-Puzzles / RNA_assessment
  Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…
  ☆17Updated 4 months ago
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆87Updated 2 months ago