LinearFold / LinearPartitionLinks
Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities
☆33Updated last year
Alternatives and similar repositories for LinearPartition
Users that are interested in LinearPartition are comparing it to the libraries listed below
Sorting:
- Evolutionary velocity with protein language models☆95Updated last month
- ☆50Updated last year
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆107Updated 8 months ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆51Updated 2 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs☆12Updated last year
- ☆86Updated 2 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- ☆135Updated 3 years ago
- Predict protein local properties using sequence or profile information.☆23Updated 5 years ago
- PLM-interact: extending protein language models to predict protein-protein interactions.☆58Updated 5 months ago
- ☆36Updated last year
- Differentiable RNA folding in JAX☆27Updated 10 months ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆34Updated 4 months ago
- ☆40Updated 4 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆91Updated last year
- ☆51Updated last year
- Diverse Genomic Embedding Benchmark☆50Updated 4 months ago
- ☆78Updated 9 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆67Updated 3 years ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆75Updated 2 years ago
- Neural networks for deep mutational scanning data☆72Updated 8 months ago
- ☆25Updated 2 years ago
- Protein sequence classification with self-supervised pretraining☆82Updated 4 years ago
- The standalone version of SPOT-1D-Single available for public use for research purposes.☆24Updated last year
- ☆78Updated last year
- Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike☆46Updated 3 years ago
- Mutation effects predicted from sequence co-variation☆72Updated 8 years ago
- Code repository for the SPOC tool for scoring binary AF-M predicitons.☆15Updated 9 months ago
- Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your co…☆75Updated 2 years ago