Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding and attention map to match different types of downstream tasks.
☆71Jul 22, 2024Updated 2 years ago
Alternatives and similar repositories for RNA-MSM
Users that are interested in RNA-MSM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Foundation Language Model For Multilayer Regulation of RNA☆22Nov 30, 2025Updated 7 months ago
- Nature Methods: RNA foundation model (together with RhoFold)☆386May 27, 2025Updated last year
- RiboNucleic Acid (RNA) Language Model☆169May 4, 2026Updated 2 months ago
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆60Oct 8, 2024Updated last year
- ☆17Jun 22, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Scalable Deep Learning for RNA Secondary Structure Prediction☆43Sep 23, 2025Updated 10 months ago
- Code repository of "Deep generative design of RNA family sequences"☆42Apr 8, 2026Updated 3 months ago
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆64Aug 2, 2024Updated last year
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆68May 8, 2026Updated 2 months ago
- ☆56Oct 2, 2023Updated 2 years ago
- Single-sequence and Profile-based Prediction of RNA Solvent Accessibility Using Dilated Convolution Neural Network☆13Jun 22, 2022Updated 4 years ago
- ☆13Dec 6, 2022Updated 3 years ago
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆56Nov 17, 2024Updated last year
- An analysis of a new experimentally-derived nucleic acid binding chemical library☆32Jan 27, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆161Mar 22, 2026Updated 4 months ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆83Aug 11, 2024Updated last year
- ☆35Jan 14, 2025Updated last year
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆123Apr 7, 2024Updated 2 years ago
- ☆79Apr 22, 2025Updated last year
- RNA Multiple Sequence Alignment☆53Jul 20, 2023Updated 3 years ago
- lncRNA-Py is a development package for applying machine learning and deep learning to the problem of lncRNA classification, i.e. predicti…☆12Jan 24, 2025Updated last year
- ☆19Oct 18, 2024Updated last year
- Source code for the BUDE Alanine Scan web application.☆15May 27, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ICLR 2025: We propose Atomas, a hierarchical molecular representation learning framework that jointly learns representations from SMILES …☆19Feb 24, 2025Updated last year
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆243May 29, 2025Updated last year
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆106May 23, 2025Updated last year
- End-to-end RNA Design using deep reinforcement learning☆73Sep 26, 2022Updated 3 years ago
- ☆18Dec 10, 2022Updated 3 years ago
- A Foundation Language Model For Multilayer Regulation of RNA☆15Nov 5, 2025Updated 8 months ago
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆25Jul 1, 2026Updated 3 weeks ago
- ☆29Nov 6, 2022Updated 3 years ago
- MSA Transformer reproduction code☆92Oct 21, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆19Mar 21, 2024Updated 2 years ago
- SPOT-1D-LM: Reaching Alignment-profile-based Accuracy in Predicting Protein Secondary and Tertiary Structural Properties without Alignmen…☆11Feb 1, 2024Updated 2 years ago
- GCNfold: A novel lightweight model with valid extractors for RNA secondary structure prediction☆13Jul 23, 2023Updated 3 years ago
- ☆11Mar 11, 2025Updated last year
- Primary RNA sequence model☆42May 20, 2024Updated 2 years ago
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆27Dec 3, 2024Updated last year
- ☆20Dec 5, 2024Updated last year