Alternatives and similar repositories for RNA-MSM

Users that are interested in RNA-MSM are comparing it to the libraries listed below

• lbcb-sci / RiNALMo
  RiboNucleic Acid (RNA) Language Model
  ☆128Updated 2 weeks ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆59Updated last week
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆77Updated 8 months ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆113Updated 7 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆74Updated last month
• rmrao / msa-transformer
  MSA Transformer reproduction code
  ☆85Updated 3 years ago
• varun-shanker / structural-evolution
  ☆115Updated last year
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆46Updated 2 years ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆82Updated last year
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆66Updated 2 months ago
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆104Updated last week
• robpearc / DeepFoldRNA
  ☆36Updated last year
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆119Updated 7 months ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆70Updated 3 years ago
• aqlaboratory / rgn2
  ☆107Updated last year
• chandar-lab / AMPLIFY
  ☆115Updated 3 months ago
• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆68Updated 3 months ago
• RSchmirler / data-repo_plm-finetune-eval
  Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"
  ☆47Updated last year
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆108Updated 2 months ago
• zhanghaicang / carbonmatrix_public
  ☆116Updated 4 months ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆61Updated 2 years ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆159Updated 3 weeks ago
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆106Updated 5 months ago
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆61Updated last year
• ai4protein / ProSST
  🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)
  ☆140Updated 4 months ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆107Updated last year
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆161Updated 5 months ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆51Updated 11 months ago
• bio-ontology-research-group / deepgo2
  ☆45Updated last year
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆129Updated 3 years ago