ml4bio / RNA-FM
Nature Methods: RNA foundation model (together with RhoFold)
☆267Updated last week
Alternatives and similar repositories for RNA-FM:
Users that are interested in RNA-FM are comparing it to the libraries listed below
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆142Updated last month
- Official repository for the ProteinGym benchmarks☆300Updated last week
- Bilingual Language Model for Protein Sequence and Structure☆242Updated 4 months ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆444Updated last month
- ☆247Updated 9 months ago
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆261Updated last month
- RiboNucleic Acid (RNA) Language Model☆99Updated last month
- Deep functional residue identification☆320Updated 2 years ago
- List of computational protein design research labs☆169Updated 3 months ago
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆372Updated 4 months ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆358Updated 11 months ago
- Multi-task and masked language model-based protein sequence embedding models.☆102Updated 3 years ago
- The LinearDesign mRNA design software.☆183Updated 11 months ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆130Updated last month
- Efficient evolution from protein language models☆199Updated last year
- ☆104Updated 9 months ago
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆249Updated last month
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆114Updated last year
- Genomic Pre-trained Network☆265Updated last month
- ☆271Updated this week
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆170Updated last year
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆355Updated last year
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆318Updated last year
- Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…☆167Updated last year
- A generative latent variable model for biological sequence families.☆215Updated 3 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆310Updated 6 months ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆277Updated 3 months ago
- Protein hallucination and inpainting with RoseTTAFold☆258Updated 2 years ago
- Colab Notebooks covering deep learning tools for biomolecular structure prediction and design☆373Updated last month
- ☆308Updated 9 months ago