Nature Methods: RNA foundation model (together with RhoFold)
☆367May 27, 2025Updated 11 months ago
Alternatives and similar repositories for RNA-FM
Users that are interested in RNA-FM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆69Jul 22, 2024Updated last year
- RiboNucleic Acid (RNA) Language Model☆161Oct 3, 2025Updated 7 months ago
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆227May 29, 2025Updated 11 months ago
- ☆56Oct 2, 2023Updated 2 years ago
- ☆17Jun 22, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆37Jan 14, 2025Updated last year
- ☆94Oct 9, 2024Updated last year
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆60Oct 8, 2024Updated last year
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆65Apr 3, 2026Updated last month
- Code of a structure-enhanced RNA language model named ERNIE-RNA☆41Nov 19, 2025Updated 5 months ago
- ☆20Oct 18, 2024Updated last year
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆122Apr 7, 2024Updated 2 years ago
- ☆79Apr 22, 2025Updated last year
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆84Aug 11, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- RNA Multiple Sequence Alignment☆51Jul 20, 2023Updated 2 years ago
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆297Dec 16, 2025Updated 4 months ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆380Jun 3, 2024Updated last year
- ☆19Mar 21, 2024Updated 2 years ago
- RNAGym is an extensive benchmark suite and resource for RNA fitness and structure prediction☆37Feb 25, 2026Updated 2 months ago
- Scalable Deep Learning for RNA Secondary Structure Prediction☆42Sep 23, 2025Updated 7 months ago
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆62Aug 2, 2024Updated last year
- Repository for mRNA Paper and CodonBERT publication.☆144Jun 12, 2024Updated last year
- ☆29Nov 6, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Foundation Language Model For Multilayer Regulation of RNA☆22Nov 30, 2025Updated 5 months ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆163Mar 22, 2026Updated last month
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆107May 23, 2025Updated 11 months ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,059Feb 7, 2024Updated 2 years ago
- structRFM: A fully open structure-guided RNA foundation model for robust structural and functional inference☆33Jan 25, 2026Updated 3 months ago
- Code repository of "Deep generative design of RNA family sequences"☆40Apr 8, 2026Updated 3 weeks ago
- Primary RNA sequence model☆42May 20, 2024Updated last year
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆186Apr 8, 2026Updated 3 weeks ago
- A repository for neural representational learning of RNA secondary structures☆32Feb 13, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Toolkit for structure-based deep learning on RNA.☆46Apr 15, 2026Updated 2 weeks ago
- ☆43Oct 1, 2023Updated 2 years ago
- ☆13Dec 6, 2022Updated 3 years ago
- ☆46Jan 28, 2026Updated 3 months ago
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆68Mar 3, 2024Updated 2 years ago
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆748Jan 22, 2026Updated 3 months ago
- Foundation Models for Genomics & Transcriptomics☆859Feb 24, 2026Updated 2 months ago