Nature Methods: RNA foundation model (together with RhoFold)
☆390May 27, 2025Updated last year
Alternatives and similar repositories for RNA-FM
Users that are interested in RNA-FM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆70Jul 22, 2024Updated 2 years ago
- RiboNucleic Acid (RNA) Language Model☆173May 4, 2026Updated 3 months ago
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆246May 29, 2025Updated last year
- ☆57Oct 2, 2023Updated 2 years ago
- ☆17Jun 22, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆35Jan 14, 2025Updated last year
- Code of a structure-enhanced RNA language model named ERNIE-RNA☆46May 3, 2026Updated 3 months ago
- ☆96Oct 9, 2024Updated last year
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆60Oct 8, 2024Updated last year
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆70May 8, 2026Updated 3 months ago
- ☆20Oct 18, 2024Updated last year
- ☆79Apr 22, 2025Updated last year
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆123Apr 7, 2024Updated 2 years ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆85Aug 11, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- RNA Multiple Sequence Alignment☆53Jul 20, 2023Updated 3 years ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆380Jun 3, 2024Updated 2 years ago
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆318Dec 16, 2025Updated 8 months ago
- ☆19Mar 21, 2024Updated 2 years ago
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆65Aug 2, 2024Updated 2 years ago
- Scalable Deep Learning for RNA Secondary Structure Prediction☆44Sep 23, 2025Updated 11 months ago
- A Foundation Language Model For Multilayer Regulation of RNA☆22Nov 30, 2025Updated 9 months ago
- ☆30Nov 6, 2022Updated 3 years ago
- RNAGym is an extensive benchmark suite and resource for RNA fitness and structure prediction☆43Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Repository for mRNA Paper and CodonBERT publication.☆146May 19, 2026Updated 3 months ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆106May 23, 2025Updated last year
- Nature Computational Science: RhoDesign is a structure-to-sequence model for RNA design.☆65Nov 8, 2024Updated last year
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆185Aug 10, 2026Updated 3 weeks ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆162Mar 22, 2026Updated 5 months ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,170Feb 7, 2024Updated 2 years ago
- Primary RNA sequence model☆42May 20, 2024Updated 2 years ago
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆103Oct 15, 2025Updated 10 months ago
- Code repository of "Deep generative design of RNA family sequences"☆44Apr 8, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A repository for neural representational learning of RNA secondary structures☆33Feb 13, 2020Updated 6 years ago
- Toolkit for structure-based deep learning on RNA.☆46Updated this week
- ☆13Dec 6, 2022Updated 3 years ago
- ☆43Oct 1, 2023Updated 2 years ago
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆70Mar 3, 2024Updated 2 years ago
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆777Jan 22, 2026Updated 7 months ago
- structRFM: A fully open structure-guided RNA foundation model for robust structural and functional inference☆40Updated this week