☆37Jun 17, 2025Updated 10 months ago
Alternatives and similar repositories for VenusMine
Users that are interested in VenusMine are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆20Apr 10, 2026Updated last week
- Implementation of methods to sample from Boltzmann distributions☆21Jan 24, 2023Updated 3 years ago
- A predictor of enzyme optimal temperature☆16Mar 13, 2025Updated last year
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 📈 Fusion of sequence, structure and feature information to improve protein solubility prediction (IEEE BIBM 2024).☆30May 16, 2025Updated 11 months ago
- ☆19Nov 21, 2025Updated 4 months ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- code for SeqDance/ESMDance, biophysics-informed protein language models☆58Jan 28, 2026Updated 2 months ago
- Benchmarking scripts for Gaia☆14Apr 10, 2025Updated last year
- bakerlab pymol scripts☆26Feb 6, 2020Updated 6 years ago
- Python framework for doing ancestral sequence reconstruction☆43Mar 20, 2026Updated 3 weeks ago
- ☆97Updated this week
- ☆33Aug 12, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Mod…☆26May 16, 2025Updated 11 months ago
- Python package for P2 (Path Planning), a masked diffusion model sampling method for sequence generation (protein, text, etc.).☆23Aug 19, 2025Updated 8 months ago
- ☆21Oct 31, 2024Updated last year
- Deploying synthetic coevolution and machine learning to engineer protein-protein interactions☆16Jul 30, 2023Updated 2 years ago
- ☆124Apr 4, 2026Updated 2 weeks ago
- ☆132Mar 10, 2026Updated last month
- Versatile Embedding Network for Understanding protein Sequences☆25May 16, 2025Updated 11 months ago
- STARLING - conSTruction of intrinsicAlly disoRdered proteins ensembles efficientLy vIa multi-dimeNsional Generative models☆56Dec 23, 2025Updated 3 months ago
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆126Jan 16, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆32Jan 16, 2026Updated 3 months ago
- A python implementation of pdb2oniom for QM/MM (ONIOM) calculations☆11Oct 2, 2025Updated 6 months ago
- [NeurIPS 2024] The implementation for the paper "Geometric Trajectory Diffusion Models".☆37Jul 22, 2025Updated 8 months ago
- 🏭 AI agent platform with skills for protein engineering, the noob-friendly AI tutorial tool for life science professionals.☆214Apr 8, 2026Updated last week
- VenusFSFP: Few-Shot Protein Fitness Prediction☆113Nov 18, 2025Updated 5 months ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆71Aug 13, 2025Updated 8 months ago
- Alphafold3 using mmseqs2-gpu for sequence query☆37Feb 9, 2026Updated 2 months ago
- Homomer symmetry prediction from protein sequence☆44Mar 13, 2025Updated last year
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Jul 9, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Deep generative modeling of protein structural ensembles☆37Sep 22, 2025Updated 6 months ago
- ☆27Aug 8, 2025Updated 8 months ago
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated last month
- ☆16Dec 10, 2024Updated last year
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆74Jul 2, 2025Updated 9 months ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆89Apr 10, 2026Updated last week
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆251Jul 24, 2025Updated 8 months ago