☆40Jun 17, 2025Updated last year
Alternatives and similar repositories for VenusMine
Users that are interested in VenusMine are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🧬 Large-scale protein functional residue or fragment prediction benchmark. (ICLR 2026)☆24Apr 10, 2026Updated 3 months ago
- Implementation of methods to sample from Boltzmann distributions☆22Jan 24, 2023Updated 3 years ago
- A predictor of enzyme optimal temperature☆16Mar 13, 2025Updated last year
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Jul 25, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A fine-tuned version of ProteinMPNN for generating stable cyclic peptide sequences☆43Jun 30, 2026Updated last week
- 📈 Fusion of sequence, structure and feature information to improve protein solubility prediction (IEEE BIBM 2024).☆36May 16, 2025Updated last year
- ☆20Nov 21, 2025Updated 7 months ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- code for SeqDance/ESMDance, biophysics-informed protein language models☆60Jan 28, 2026Updated 5 months ago
- Benchmarking scripts for Gaia☆17Apr 10, 2025Updated last year
- bakerlab pymol scripts☆27Feb 6, 2020Updated 6 years ago
- Python framework for doing ancestral sequence reconstruction☆44Jul 3, 2026Updated last week
- ☆99Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆33Aug 12, 2024Updated last year
- 🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Mod…☆27May 16, 2025Updated last year
- Python package for P2 (Path Planning), a masked diffusion model sampling method for sequence generation (protein, text, etc.).☆23Aug 19, 2025Updated 10 months ago
- ☆21Oct 31, 2024Updated last year
- Deploying synthetic coevolution and machine learning to engineer protein-protein interactions☆17Jul 30, 2023Updated 2 years ago
- ☆138May 18, 2026Updated last month
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆126Apr 23, 2026Updated 2 months ago
- ☆135Jun 9, 2026Updated last month
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆33Jun 25, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A python implementation of pdb2oniom for QM/MM (ONIOM) calculations☆12Oct 2, 2025Updated 9 months ago
- [NeurIPS 2024] The implementation for the paper "Geometric Trajectory Diffusion Models".☆39Jul 22, 2025Updated 11 months ago
- Versatile Embedding Network for Understanding protein Sequences☆26May 16, 2025Updated last year
- STARLING - conSTruction of intrinsicAlly disoRdered proteins ensembles efficientLy vIa multi-dimeNsional Generative models☆70Jun 4, 2026Updated last month
- VenusFSFP: Few-Shot Protein Fitness Prediction☆117Nov 18, 2025Updated 7 months ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆71Aug 13, 2025Updated 10 months ago
- Homomer symmetry prediction from protein sequence☆45Mar 13, 2025Updated last year
- Alphafold3 using mmseqs2-gpu for sequence query☆40Feb 9, 2026Updated 5 months ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆41Jul 9, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Deep generative modeling of protein structural ensembles☆38May 27, 2026Updated last month
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 4 months ago
- code for adjoint-based diffusion samplers☆51Nov 24, 2025Updated 7 months ago
- 🏭 AI agent platform with skills for protein engineering, the noob-friendly AI tutorial tool for life science professionals.☆241Jun 26, 2026Updated 2 weeks ago
- ☆16Dec 10, 2024Updated last year
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆75Jul 2, 2025Updated last year
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆95Apr 10, 2026Updated 3 months ago