☆39Jun 17, 2025Updated 11 months ago
Alternatives and similar repositories for VenusMine
Users that are interested in VenusMine are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Apr 10, 2026Updated last month
- Implementation of methods to sample from Boltzmann distributions☆22Jan 24, 2023Updated 3 years ago
- A predictor of enzyme optimal temperature☆16Mar 13, 2025Updated last year
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Jul 25, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A fine-tuned version of ProteinMPNN for generating stable cyclic peptide sequences☆40Feb 2, 2026Updated 3 months ago
- 📈 Fusion of sequence, structure and feature information to improve protein solubility prediction (IEEE BIBM 2024).☆34May 16, 2025Updated last year
- ☆20Nov 21, 2025Updated 6 months ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- code for SeqDance/ESMDance, biophysics-informed protein language models☆60Jan 28, 2026Updated 4 months ago
- Benchmarking scripts for Gaia☆15Apr 10, 2025Updated last year
- bakerlab pymol scripts☆26Feb 6, 2020Updated 6 years ago
- Python framework for doing ancestral sequence reconstruction☆43Mar 20, 2026Updated 2 months ago
- ☆96Apr 16, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆33Aug 12, 2024Updated last year
- 🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Mod…☆27May 16, 2025Updated last year
- Python package for P2 (Path Planning), a masked diffusion model sampling method for sequence generation (protein, text, etc.).☆23Aug 19, 2025Updated 9 months ago
- ☆21Oct 31, 2024Updated last year
- Deploying synthetic coevolution and machine learning to engineer protein-protein interactions☆17Jul 30, 2023Updated 2 years ago
- ☆129May 18, 2026Updated 2 weeks ago
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆126Apr 23, 2026Updated last month
- ☆134May 23, 2026Updated last week
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆33May 11, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A python implementation of pdb2oniom for QM/MM (ONIOM) calculations☆12Oct 2, 2025Updated 7 months ago
- [NeurIPS 2024] The implementation for the paper "Geometric Trajectory Diffusion Models".☆38Jul 22, 2025Updated 10 months ago
- Versatile Embedding Network for Understanding protein Sequences☆25May 16, 2025Updated last year
- STARLING - conSTruction of intrinsicAlly disoRdered proteins ensembles efficientLy vIa multi-dimeNsional Generative models☆64Apr 15, 2026Updated last month
- VenusFSFP: Few-Shot Protein Fitness Prediction☆115Nov 18, 2025Updated 6 months ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆71Aug 13, 2025Updated 9 months ago
- Alphafold3 using mmseqs2-gpu for sequence query☆39Feb 9, 2026Updated 3 months ago
- Homomer symmetry prediction from protein sequence☆44Mar 13, 2025Updated last year
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Jul 9, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Deep generative modeling of protein structural ensembles☆37Updated this week
- ☆28Aug 8, 2025Updated 9 months ago
- 🏭 AI agent platform with skills for protein engineering, the noob-friendly AI tutorial tool for life science professionals.☆232May 17, 2026Updated 2 weeks ago
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 3 months ago
- code for adjoint-based diffusion samplers☆50Nov 24, 2025Updated 6 months ago
- ☆16Dec 10, 2024Updated last year
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆75Jul 2, 2025Updated 10 months ago