Doudna-lab / GARNET_DL
☆27Updated last week
Related projects ⓘ
Alternatives and complementary repositories for GARNET_DL
- Repository for Protein-Vec, a protein embedding mixture of experts model☆34Updated 9 months ago
- ☆63Updated last month
- Deep learning prediction of enzyme optimum pH☆22Updated 11 months ago
- Protein language model trained on coding DNA☆38Updated 2 weeks ago
- RNA Multiple Sequence Alignment☆24Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆61Updated 3 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆22Updated 7 months ago
- An antibody-specific language model focusing on NGL prediction☆12Updated 5 months ago
- A domain parser for Alphafold models☆32Updated 10 months ago
- ☆52Updated last month
- RhoFold+: Accurate RNA 3D structure prediction using a language model-based deep learning approach☆31Updated 9 months ago
- Graph Network for protein-protein interface including language model features☆25Updated 7 months ago
- ☆45Updated 5 months ago
- Machine learning models for antibody sequences in PyTorch☆38Updated 3 years ago
- Predict the structure of immune receptor proteins☆46Updated this week
- An antibody-specific language model focusing on NGL prediction☆20Updated 2 months ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆18Updated last year
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated this week
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆47Updated 6 months ago
- Code repository of "Deep generative design of RNA family sequences"☆28Updated 3 months ago
- ☆28Updated last month
- Fast deep learning methods for large-scale protein-protein interaction screening☆23Updated last month
- Evolutionary velocity with protein language models☆83Updated last year
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆26Updated 4 years ago
- Machine learning-driven antibody design☆51Updated last year
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆28Updated last year
- Results and data from the pilot round of the Protein Engineering Tournament☆23Updated this week
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆31Updated 2 years ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆47Updated 7 months ago