Doudna-lab / GARNET_DL
☆28Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for GARNET_DL
- Repository for Protein-Vec, a protein embedding mixture of experts model☆34Updated 9 months ago
- Deep learning prediction of enzyme optimum pH☆23Updated 11 months ago
- ☆63Updated last month
- RNA Multiple Sequence Alignment☆24Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- Protein language model trained on coding DNA☆38Updated last month
- ☆29Updated last month
- ☆21Updated 5 months ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆31Updated 2 years ago
- Graph Network for protein-protein interface including language model features☆25Updated 7 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆47Updated 6 months ago
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated 2 weeks ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆62Updated 4 months ago
- A domain parser for Alphafold models☆32Updated 11 months ago
- RhoFold+: Accurate RNA 3D structure prediction using a language model-based deep learning approach☆33Updated 9 months ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆22Updated 8 months ago
- ☆53Updated last month
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆24Updated 3 weeks ago
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆12Updated 8 months ago
- Detection of remote homology by comparison of protein language model representations☆44Updated this week
- Fast deep learning methods for large-scale protein-protein interaction screening☆24Updated last month
- Evolutionary velocity with protein language models☆83Updated last year
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆19Updated last year
- An antibody-specific language model focusing on NGL prediction☆13Updated 5 months ago
- Predict the structure of immune receptor proteins☆47Updated last week
- ☆45Updated 5 months ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆47Updated 7 months ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆30Updated last month
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆28Updated last year
- ☆18Updated 3 years ago