Alternatives and similar repositories for GARNET_DL

Users that are interested in GARNET_DL are comparing it to the libraries listed below

• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated 2 years ago
• pfnet-research / GenerRNA
  ☆19Updated last year
• tymor22 / tm-vec
  ☆76Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆60Updated 4 years ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆53Updated last year
• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆40Updated 2 months ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆47Updated 2 years ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆34Updated last year
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆117Updated 6 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆95Updated 2 months ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆62Updated 3 weeks ago
• Wang-lab-UCSD / RESP
  The code used to generate the results from Parkinson / Hard et al. 2022
  ☆17Updated 7 months ago
• SNU-CSSB / RF2-Lite
  ☆33Updated last year
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆50Updated 9 months ago
• liudan111 / PLM-interact
  PLM-interact: extending protein language models to predict protein-protein interactions.
  ☆60Updated 5 months ago
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆34Updated 5 months ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆91Updated last year
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆131Updated 3 weeks ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆80Updated 4 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• sacdallago / biotrainer
  Biological prediction models made simple.
  ☆48Updated 3 weeks ago
• alex-hh / deep-protein-generation
  ☆60Updated 3 years ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 5 years ago
• ronboger / conformal-protein-retrieval
  ☆16Updated this week
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆108Updated last month
• TattaBio / gLM2
  ☆79Updated last year
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆41Updated 5 months ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆39Updated last year
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆61Updated 2 years ago
• piercelab / tcrmodel2
  ☆46Updated 10 months ago