☆37Jan 14, 2025Updated last year
Alternatives and similar repositories for GARNET_DL
Users that are interested in GARNET_DL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆20Oct 18, 2024Updated 2 years ago
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆57Nov 17, 2024Updated last year
- Scalable Deep Learning for RNA Secondary Structure Prediction☆43Sep 23, 2025Updated last year
- Nature Methods: RNA foundation model (together with RhoFold)☆394May 27, 2025Updated last year
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆72May 8, 2026Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆23Jun 26, 2023Updated 3 years ago
- ☆19Jul 1, 2026Updated 3 months ago
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆26Oct 15, 2026Updated 2 weeks ago
- We propose PepBCL, a novel BERT (Bidirectional Encoder Representation from Transformers)-based Contrastive Learning framework to predict …☆19Mar 29, 2023Updated 3 years ago
- Toolkit for structure-based deep learning on RNA.☆46Oct 20, 2026Updated last week
- ☆17Jun 22, 2024Updated 2 years ago
- RNA Multiple Sequence Alignment☆53Jul 20, 2023Updated 3 years ago
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆322Dec 16, 2025Updated 10 months ago
- Learning to Generate UTR Sequences for Optimized Ribosome Load and Gene Expression☆25May 11, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆71Jun 16, 2026Updated 4 months ago
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆27Dec 3, 2024Updated last year
- RiboNucleic Acid (RNA) Language Model☆180Oct 8, 2026Updated 3 weeks ago
- Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆71Jul 22, 2024Updated 2 years ago
- Modelling RBP binding preferences to predict RPB binding sites☆11Aug 11, 2023Updated 3 years ago
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆18Jun 10, 2022Updated 4 years ago
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆60Oct 8, 2024Updated 2 years ago
- ☆11Dec 13, 2022Updated 3 years ago
- Fast indexing and search of discontinuous motifs in protein structures☆221Oct 15, 2026Updated 2 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- RNAPro is a state-of-the-art RNA 3D folding model developed in collaboration with the hosts and winners of the Stanford RNA 3D Folding Ka…☆103Jun 5, 2026Updated 4 months ago
- Practically and asymptotically accurate conditional sampling from diffusion generative models without conditional training☆50Nov 24, 2024Updated last year
- A Python library containing RNA-related bioinformatics functions and classes.☆24Oct 22, 2026Updated last week
- A Benchmark Library for RNA☆10Jun 3, 2026Updated 4 months ago
- Benchmarking equivariant neural networks.☆10Dec 5, 2020Updated 5 years ago
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Apr 4, 2024Updated 2 years ago
- Code to build models that effectively predict promoter-driven gene expression☆13May 15, 2025Updated last year
- Compressing protein structures effectively with torsion angles☆199Sep 7, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Draw RNA secondary structures in python.☆54Jun 24, 2025Updated last year
- Benchmarking scripts for Gaia☆17Apr 10, 2025Updated last year
- Hypergraph Factorisation☆26Nov 28, 2024Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆74Aug 4, 2026Updated 2 months ago
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆104Oct 15, 2025Updated last year
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆248May 29, 2025Updated last year
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆55Oct 31, 2025Updated 11 months ago