☆36Jan 14, 2025Updated last year
Alternatives and similar repositories for GARNET_DL
Users that are interested in GARNET_DL are comparing it to the libraries listed below
Sorting:
- ☆19Oct 18, 2024Updated last year
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆52Nov 17, 2024Updated last year
- ☆16Feb 20, 2026Updated last month
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆22Mar 8, 2026Updated last week
- We propose PepBCL, a novel BERT (Bidirectional Encoder Representation from Transformers)-based Contrastive Learning framework to predict …☆16Mar 29, 2023Updated 2 years ago
- Nature Methods: RNA foundation model (together with RhoFold)☆360May 27, 2025Updated 9 months ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆63Feb 12, 2026Updated last month
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆291Dec 16, 2025Updated 3 months ago
- Scalable Deep Learning for RNA Secondary Structure Prediction☆40Sep 23, 2025Updated 5 months ago
- Learning to Generate UTR Sequences for Optimized Ribosome Load and Gene Expression☆22May 11, 2025Updated 10 months ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆66Jul 17, 2024Updated last year
- Benchmarking scripts for Gaia☆14Apr 10, 2025Updated 11 months ago
- RiboNucleic Acid (RNA) Language Model☆160Oct 3, 2025Updated 5 months ago
- GeneBac: a modular framework for predicting antibiotic resistance from DNA sequence.☆16Jan 3, 2024Updated 2 years ago
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Jun 26, 2023Updated 2 years ago
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆17Jun 10, 2022Updated 3 years ago
- python codes for iDNA-ABF: multi-scale deep biological language learning model for the accurate and interpretable prediction of DNA methy…☆15May 6, 2024Updated last year
- Modelling RBP binding preferences to predict RPB binding sites☆11Aug 11, 2023Updated 2 years ago
- Draw RNA secondary structures in python.☆51Jun 24, 2025Updated 8 months ago
- Rapid structure-based virtual screening for RNA targets.☆28Mar 6, 2026Updated 2 weeks ago
- Toolkit for structure-based deep learning on RNA.☆45Feb 9, 2026Updated last month
- RNAPro is a state-of-the-art RNA 3D folding model developed in collaboration with the hosts and winners of the Stanford RNA 3D Folding Ka…☆71Jan 17, 2026Updated 2 months ago
- RNA Multiple Sequence Alignment☆50Jul 20, 2023Updated 2 years ago
- Code to build models that effectively predict promoter-driven gene expression☆11May 15, 2025Updated 10 months ago
- Aligning protein generative models with experimental fitness☆120Mar 12, 2026Updated last week
- ☆123Feb 20, 2026Updated last month
- Protein representation and design under a single training scheme☆24Mar 3, 2026Updated 2 weeks ago
- ☆16Dec 10, 2025Updated 3 months ago
- Compressing protein structures effectively with torsion angles☆189Feb 10, 2026Updated last month
- ☆20Jul 16, 2024Updated last year
- Deconvolution of RNA Alternative COnformations☆15Updated this week
- init commit☆15Oct 31, 2023Updated 2 years ago
- Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆70Jul 22, 2024Updated last year
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆123Feb 7, 2026Updated last month
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆150Apr 16, 2025Updated 11 months ago
- Fast protein backbone generation with SE(3) flow matching.☆317Jul 19, 2024Updated last year
- ☆13Oct 19, 2023Updated 2 years ago
- A repository for neural representational learning of RNA secondary structures☆32Feb 13, 2020Updated 6 years ago