satoken / centroid-rna-packageView external linksLinks
Centroid RNA package
☆19Oct 12, 2020Updated 5 years ago
Alternatives and similar repositories for centroid-rna-package
Users that are interested in centroid-rna-package are comparing it to the libraries listed below
Sorting:
- An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs☆12Jun 28, 2024Updated last year
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆21Updated this week
- ☆20Jul 16, 2024Updated last year
- SPOT-1D-LM: Reaching Alignment-profile-based Accuracy in Predicting Protein Secondary and Tertiary Structural Properties without Alignmen…☆11Feb 1, 2024Updated 2 years ago
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆15Feb 6, 2026Updated last week
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆181Feb 8, 2026Updated last week
- A platform to do RNA science☆27Mar 7, 2021Updated 4 years ago
- Template-based RNA secondary structure visualization☆27Nov 20, 2024Updated last year
- Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities☆33May 24, 2024Updated last year
- With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...☆176Nov 24, 2023Updated 2 years ago
- RNA Structural Bioinformatics Crash Course & Data Science in Python☆13Oct 19, 2022Updated 3 years ago
- ☆13Jun 5, 2015Updated 10 years ago
- Create force-directed graphs of RNA secondary structures.☆110Jun 6, 2020Updated 5 years ago
- A pipeline for structural clustering of RNA secondary structures☆15Apr 21, 2021Updated 4 years ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆107May 23, 2025Updated 8 months ago
- G33KB00K3 - fun to read & fun to write -- 🤓 eXtreme eXtendable note taking system for nerds/geeks (including scientists!) docs: http://g…☆44Sep 30, 2025Updated 4 months ago
- The tRNA adaptation index☆19Apr 25, 2025Updated 9 months ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Nov 11, 2022Updated 3 years ago
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆23Sep 7, 2023Updated 2 years ago
- Direct coupling analysis software for protein and RNA sequences☆58Jul 21, 2025Updated 6 months ago
- Arnie-based DegScore tool.☆27Sep 30, 2022Updated 3 years ago
- nucleic acid folding☆110Aug 12, 2025Updated 6 months ago
- A Kotlin DSL to create and plot RNA 2D structures. The drawing engine behind RNArtist to be used from the command line.☆30Jan 16, 2025Updated last year
- Ultra-fast 5' and 3' demultiplexer☆29Apr 23, 2024Updated last year
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆34Apr 3, 2021Updated 4 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆80Feb 7, 2026Updated last week
- Public repository for ShapeMapper 2 releases☆41Jan 2, 2026Updated last month
- ☆10Aug 29, 2023Updated 2 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated 3 weeks ago
- Deep learning based prediction of pi-helices in protein sequences☆11Mar 24, 2023Updated 2 years ago
- WebGL based molecular viewer☆36Updated this week
- Libero Reviewer☆10Apr 27, 2023Updated 2 years ago
- Prepare topology and coordinate file for CG models in Genesis.☆13Jul 3, 2025Updated 7 months ago
- ☆15Jun 29, 2015Updated 10 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆44Updated this week
- Analyse Nucleic Acids Structure and Simulations with baRNAba☆47Mar 20, 2024Updated last year
- Tachyon library, written by John Stone☆14Sep 5, 2019Updated 6 years ago
- Visualization for hidden Markov model computations☆14Dec 19, 2014Updated 11 years ago
- Effective Attention Sheds Light On Interpretability - Findings of ACL2021☆11May 16, 2021Updated 4 years ago