Centroid RNA package
☆20Oct 12, 2020Updated 5 years ago
Alternatives and similar repositories for centroid-rna-package
Users that are interested in centroid-rna-package are comparing it to the libraries listed below
Sorting:
- Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/arch…☆10Apr 6, 2023Updated 2 years ago
- SPOT-1D-LM: Reaching Alignment-profile-based Accuracy in Predicting Protein Secondary and Tertiary Structural Properties without Alignmen…☆11Feb 1, 2024Updated 2 years ago
- Draw RNA secondary structures in python.☆49Jun 24, 2025Updated 8 months ago
- A platform to do RNA science☆27Mar 7, 2021Updated 4 years ago
- StructureFold2☆12Jun 25, 2022Updated 3 years ago
- Template-based RNA secondary structure visualization☆27Nov 20, 2024Updated last year
- Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities☆34May 24, 2024Updated last year
- SHAPE-guided RNA structural homology search☆12Aug 12, 2025Updated 6 months ago
- With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...☆177Nov 24, 2023Updated 2 years ago
- ☆14Dec 10, 2018Updated 7 years ago
- RNA Structural Bioinformatics Crash Course & Data Science in Python☆13Oct 19, 2022Updated 3 years ago
- RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io☆14Nov 3, 2022Updated 3 years ago
- RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.☆16May 6, 2025Updated 10 months ago
- Create force-directed graphs of RNA secondary structures.☆110Jun 6, 2020Updated 5 years ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆107May 23, 2025Updated 9 months ago
- G33KB00K3 - fun to read & fun to write -- 🤓 eXtreme eXtendable note taking system for nerds/geeks (including scientists!) docs: http://g…☆45Sep 30, 2025Updated 5 months ago
- The tRNA adaptation index☆19Apr 25, 2025Updated 10 months ago
- Integer programming based prediction of RNA secondary structures with pseudoknots☆21Nov 30, 2025Updated 3 months ago
- Integrative Python library for RNA Secondary Structure Analysis☆20Mar 26, 2025Updated 11 months ago
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆23Sep 7, 2023Updated 2 years ago
- Direct coupling analysis software for protein and RNA sequences☆58Jul 21, 2025Updated 7 months ago
- Arnie-based DegScore tool.☆27Sep 30, 2022Updated 3 years ago
- nucleic acid folding☆110Aug 12, 2025Updated 6 months ago
- icSHAPE pipeline☆31Oct 1, 2015Updated 10 years ago
- Ultra-fast 5' and 3' demultiplexer☆29Apr 23, 2024Updated last year
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆34Apr 3, 2021Updated 4 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆80Updated this week
- ☆10Aug 29, 2023Updated 2 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated last month
- Deep learning based prediction of pi-helices in protein sequences☆11Mar 24, 2023Updated 2 years ago
- Public repository for ShapeMapper 2 releases☆42Jan 2, 2026Updated 2 months ago
- WebGL based molecular viewer☆36Feb 13, 2026Updated 3 weeks ago
- ☆15Jun 29, 2015Updated 10 years ago
- Libero Reviewer☆10Apr 27, 2023Updated 2 years ago
- FIX metadata model☆11Nov 18, 2015Updated 10 years ago
- Prepare topology and coordinate file for CG models in Genesis.☆13Jul 3, 2025Updated 8 months ago
- wwPDB PDBx/mmCIF Dictionary☆10Jan 28, 2026Updated last month
- An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader dat…☆10Aug 12, 2025Updated 6 months ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Oct 7, 2020Updated 5 years ago