Alternatives and similar repositories for centroid-rna-package

Users that are interested in centroid-rna-package are comparing it to the libraries listed below

• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆74Updated last month
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆41Updated last week
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆151Updated 9 months ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆113Updated 2 years ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆69Updated 8 years ago
• ViennaRNA / forna
  Create force-directed graphs of RNA secondary structures.
  ☆105Updated 5 years ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆94Updated 7 months ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆47Updated 6 years ago
• cusbg / traveler
  Template-based RNA secondary structure visualization
  ☆26Updated 10 months ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆47Updated 3 years ago
• eternagame / draw_rna
  Draw RNA secondary structures in python.
  ☆48Updated 2 months ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆97Updated this week
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆35Updated 10 months ago
• ntranoslab / esm-variants
  ☆78Updated 2 years ago
• DennisGankin / species-aware-DNA-LM
  Species-aware DNA language modeling
  ☆18Updated 2 years ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆57Updated last year
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆65Updated last year
• jafetgado / PyCanal
  Conservation analysis of homologous proteins with Python
  ☆12Updated 4 years ago
• prehensilecode / alphafold_singularity
  Singularity recipe for AlphaFold
  ☆36Updated 10 months ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆187Updated this week
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆119Updated last year
• mmagnus / rna-tools
  🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …
  ☆177Updated last month
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆85Updated 4 months ago
• eternagame / EternaFold
  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
  ☆62Updated last year
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆59Updated 5 months ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆109Updated 4 years ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated last year
• mariodosreis / tai
  The tRNA adaptation index
  ☆18Updated 4 months ago
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆42Updated last month