Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins
☆15Dec 7, 2021Updated 4 years ago
Alternatives and similar repositories for binnacle
Users that are interested in binnacle are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Aug 15, 2025Updated 9 months ago
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- MAG Circularization Method☆33Nov 4, 2025Updated 7 months ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Mar 3, 2025Updated last year
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆20May 11, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆47Jun 27, 2023Updated 2 years ago
- Minimal Microbial Consortia creation tools☆13Jan 28, 2022Updated 4 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆163Jun 1, 2026Updated last week
- ☆27Jun 20, 2023Updated 2 years ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Mar 7, 2024Updated 2 years ago
- MetaCarvel: A scaffolder for metagenomes☆14Apr 13, 2026Updated last month
- a simple tool for listing conda environments with descriptions☆16Mar 28, 2025Updated last year
- MAGScoT - a MAG scoring and refinement tool☆44Apr 8, 2026Updated 2 months ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆43May 4, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A listing of software, tools and databases useful for virome analysis☆76Jun 1, 2026Updated last week
- viralFlye pipeline☆18Aug 12, 2024Updated last year
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 7 months ago
- Variational autoencoder for metagenomic binning☆328Apr 27, 2026Updated last month
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆18Jun 3, 2026Updated last week
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- ☆18Dec 2, 2022Updated 3 years ago
- Strain resolver for metagenomics☆80Aug 2, 2024Updated last year
- Lightweight bioinformatics pipeline for microbial genome recovery☆18Oct 23, 2025Updated 7 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Phyling: phylogenetic inference from annotated genomes☆33May 23, 2026Updated 2 weeks ago
- 🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit☆24Apr 23, 2026Updated last month
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 3 months ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆106Apr 23, 2026Updated last month
- GraftM - Rapid community profiles from metagenomes☆53Nov 6, 2025Updated 7 months ago
- ☆21Apr 20, 2026Updated last month
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆76Updated this week
- Metagenomic binning based on Hi-C data☆29Aug 7, 2025Updated 10 months ago
- Vanilla regression methods for microbiome differential abundance analysis☆61Nov 3, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24May 27, 2026Updated 2 weeks ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆27Nov 2, 2025Updated 7 months ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Aug 2, 2022Updated 3 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆267Mar 20, 2025Updated last year
- ☆51May 29, 2026Updated last week
- Deep learning for Metagenome Assembly Error Detection☆26Nov 30, 2020Updated 5 years ago
- TransAnnot - a fast transcriptome annotation pipeline☆20Jan 22, 2025Updated last year