Minimal Microbial Consortia creation tools
☆13Jan 28, 2022Updated 4 years ago
Alternatives and similar repositories for MiMiC
Users that are interested in MiMiC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Profiler for metagenomics based on NGLess☆14Feb 22, 2024Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Dec 7, 2021Updated 4 years ago
- Population genomics from metagenomes☆13Sep 1, 2024Updated last year
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆107Sep 17, 2022Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆20May 11, 2022Updated 4 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- viralFlye pipeline☆18Aug 12, 2024Updated last year
- dada2 formatted nifH database☆13May 17, 2024Updated 2 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Jun 28, 2021Updated 5 years ago
- An R package containing the functions for the Open Bodem Index (OBI)☆14Jul 2, 2026Updated last month
- From annotated genomes to metabolic screening in large scale microbiotas☆77Jul 27, 2026Updated last week
- Virus Protein Family tools☆31Jul 20, 2022Updated 4 years ago
- A tool for domain based annotation with databases from the Conserved Domains Database☆30May 26, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆76Dec 1, 2025Updated 8 months ago
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆20May 22, 2020Updated 6 years ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Nov 28, 2023Updated 2 years ago
- Repository for Bioinformatics scripts and basic programs developed by L.M.C☆10Jun 2, 2023Updated 3 years ago
- Microbiome Analysis Plotting and Visualization☆12Updated this week
- R package for downstream Microbiome analysis☆31Dec 10, 2024Updated last year
- map Illumina metagenomes to genomes!☆39Jan 22, 2026Updated 6 months ago
- ☆24Dec 5, 2018Updated 7 years ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆272May 13, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆18Nov 24, 2025Updated 8 months ago
- PaperBLAST: find papers about a protein or its homologs☆53Jul 14, 2026Updated 3 weeks ago
- microbial association network clustering algorithm☆14Dec 14, 2023Updated 2 years ago
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling☆19May 26, 2026Updated 2 months ago
- A conda-smithy repository for vtk.☆16Jul 24, 2026Updated 2 weeks ago
- UniProt Id Mapping through API☆40Sep 22, 2025Updated 10 months ago
- Python package simulating artificial selection on microbial communities☆15Aug 15, 2023Updated 2 years ago
- Automatic RNA-Seq Pipelines with Interactive Report☆25Jun 1, 2025Updated last year
- The code and distributable for designing minimal microbial communities with specified metabolic functions.☆11Aug 9, 2017Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆12Dec 10, 2024Updated last year
- Nucleotide-pair encoding of 16S rRNA sequences for host phenotype and biomarker detection☆11Mar 17, 2019Updated 7 years ago
- Automated synthetic microbial Community Design☆13Mar 26, 2021Updated 5 years ago
- Toolchest Python client☆15Sep 6, 2023Updated 2 years ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆10Mar 26, 2026Updated 4 months ago
- CarveMe: genome-scale metabolic model reconstruction☆216Sep 12, 2025Updated 10 months ago
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆60Jul 7, 2026Updated last month