Minimal Microbial Consortia creation tools
☆13Jan 28, 2022Updated 4 years ago
Alternatives and similar repositories for MiMiC
Users that are interested in MiMiC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Sep 14, 2026Updated last month
- Profiler for metagenomics based on NGLess☆14Feb 22, 2024Updated 2 years ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆106Sep 17, 2022Updated 4 years ago
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Dec 7, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆274May 13, 2026Updated 5 months ago
- Population genomics from metagenomes☆13Sep 1, 2024Updated 2 years ago
- Set of utilities on sequences and BAM files☆28Oct 27, 2021Updated 5 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 3 years ago
- viralFlye pipeline☆19Aug 12, 2024Updated 2 years ago
- The gview wiki migrated to GitHub.☆12Sep 3, 2020Updated 6 years ago
- CarveMe: genome-scale metabolic model reconstruction☆223Sep 12, 2025Updated last year
- memote – the genome-scale metabolic model test suite☆152Aug 14, 2025Updated last year
- dada2 formatted nifH database☆13May 17, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Jun 28, 2021Updated 5 years ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆21May 11, 2022Updated 4 years ago
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆60Sep 3, 2026Updated last month
- Tool to estimate genome quality of microbial eukaryotes☆48Aug 14, 2026Updated 2 months ago
- An R package containing the functions for the Open Bodem Index (OBI)☆17Oct 20, 2026Updated last week
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆13Nov 28, 2023Updated 2 years ago
- R package to perform calculations on data produced from quantitative stable isotope probing (qSIP) experiments☆10Oct 14, 2025Updated last year
- Repository for Bioinformatics scripts and basic programs developed by L.M.C☆10Jun 2, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tool for domain based annotation with databases from the Conserved Domains Database☆29May 26, 2026Updated 5 months ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 4 years ago
- From annotated genomes to metabolic screening in large scale microbiotas☆77Oct 16, 2026Updated 2 weeks ago
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆21May 22, 2020Updated 6 years ago
- ✨🧬 Refined binning of metagenomic contigs using assembly graphs☆97Mar 6, 2025Updated last year
- Parallel/Homoplasic SNP Finder☆20May 3, 2023Updated 3 years ago
- Physalia workshop on Generalized Linear Latent Variable Models by Bert van der Veen☆15Jul 14, 2026Updated 3 months ago
- ☆24Dec 5, 2018Updated 7 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆78Aug 13, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Quorum sensing gene database for archaea and bacteria☆10Aug 31, 2023Updated 3 years ago
- Deep learning for Metagenome Assembly Error Detection☆26Nov 30, 2020Updated 5 years ago
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated 9 months ago
- R package for downstream Microbiome analysis☆31Dec 10, 2024Updated last year
- ☆65Updated this week
- MAG Circularization Method☆33Nov 4, 2025Updated 11 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Jun 13, 2023Updated 3 years ago