Phyling: phylogenetic inference from annotated genomes
☆33Jul 20, 2026Updated this week
Alternatives and similar repositories for Phyling
Users that are interested in Phyling are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆99Updated this week
- A rapid and low-memory multiple-genome aligner for closely related genomes☆26Sep 3, 2025Updated 10 months ago
- tree visualization for tree + annotation data☆62Jun 17, 2025Updated last year
- ☆32Mar 3, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- ☆28May 12, 2026Updated 2 months ago
- Generate alternative long reads with the help of target`s assemblies, target`s PacBio HiFi reads and reference genome.☆20Mar 25, 2026Updated 4 months ago
- ☆16Apr 3, 2023Updated 3 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆43Jul 9, 2026Updated 2 weeks ago
- Modular Genome Assembly, Annotation and Assessment Pipeline☆21Mar 16, 2026Updated 4 months ago
- ☆45Dec 11, 2025Updated 7 months ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆50May 30, 2026Updated last month
- Sketch phylogenetic trees and networks☆26Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A machine learning approach to alignment filtering☆16Jun 18, 2026Updated last month
- Eukaryotic Genome Annotation Pipeline☆393Updated this week
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- ML phylogenetic inference for non-model organisms with short reads & assemblies☆15Jun 30, 2026Updated 3 weeks ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- ☆22Jan 13, 2026Updated 6 months ago
- Eukaryotic genome annotation software.☆28Jul 16, 2026Updated last week
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆29Jan 15, 2026Updated 6 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆60Jul 5, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Quartet-based species tree and tree of blob estimation☆16Jul 3, 2026Updated 3 weeks ago
- Genome annotation pre-publication results☆36Jun 19, 2026Updated last month
- ☆24Nov 19, 2025Updated 8 months ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24Jul 1, 2026Updated 3 weeks ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆26Nov 14, 2025Updated 8 months ago
- ☆21Feb 15, 2025Updated last year
- High throughput python tool for mining and analysis of gene duplications.☆16Mar 24, 2026Updated 4 months ago
- Visualing species tree from ASTRAL with gene tree discordance☆33Jul 3, 2026Updated 3 weeks ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆77Jun 4, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆29Jul 16, 2022Updated 4 years ago
- Working with the outputs of sourmash in R☆29Jan 15, 2026Updated 6 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- Foreign Contamination Screening caller scripts and documentation☆167Mar 18, 2025Updated last year
- Identify and find telomeres, or telomeric repeats in a genome.☆171Nov 24, 2025Updated 8 months ago
- The MitoGeneExtractor can be used to extract protein coding mitochondrial genes, such as COI and others from short and long read sequenci…☆10Apr 5, 2026Updated 3 months ago
- que paquete☆10Jul 17, 2024Updated 2 years ago