Alternatives and similar repositories for Phyling

Users that are interested in Phyling are comparing it to the libraries listed below

• Tancata / phylo
  Helper scripts for making phylogenies
  ☆15Updated last year
• BenoitMorel / AleRax
  Gene tree - species tree reconciliation from gene tree distributions
  ☆34Updated last week
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆45Updated 7 months ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆37Updated last month
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago
• balabanmetin / uDance
  ☆42Updated last year
• Sanrrone / GGisy
  Genome-Genome circle synteny
  ☆25Updated last year
• drboothtj / getphylo
  a python package for automated generation of phylogenetic trees from genbank files
  ☆23Updated 7 months ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆44Updated 3 months ago
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆46Updated last week
• blackrim / phyutility
  ☆22Updated 11 years ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆64Updated last week
• dib-lab / charcoal
  Remove contaminated contigs from genomes using k-mers and taxonomies.
  ☆59Updated 2 years ago
• JLSteenwyk / orthofisher
  a broadly applicable tool for automated gene identification and retrieval
  ☆32Updated 11 months ago
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆53Updated 3 weeks ago
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆51Updated 3 weeks ago
• irycisBioinfo / PATO
  PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
  ☆62Updated 2 years ago
• danny-wilson / genomegaMap
  Within-species genome-wide dN/dS estimation from very many genomes
  ☆21Updated 5 years ago
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆29Updated last year
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆32Updated last year
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆25Updated last year
• cjneely10 / EukMetaSanity
  Structural and functional annotation of eukaryotic metagenome-assembled genomes
  ☆22Updated 2 years ago
• rvicedomini / strainberry
  Automated strain separation of low-complexity metagenomes
  ☆52Updated 3 years ago
• steineggerlab / ufcg
  UFCG: Universal Fungal Core Genes
  ☆34Updated 3 months ago
• GDKO / AvP
  Automatic evaluation of HGTs
  ☆30Updated 9 months ago
• LKremer / MSA_trimmer
  Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
  ☆17Updated 6 years ago
• gene2dis / BugBuster
  Repository for general metagenomics Nextflow pipeline
  ☆23Updated last month
• brinkmanlab / islandpath
  IslandPath standalone software
  ☆33Updated 2 years ago
• LottePronk / whokaryote
  Classify metagenomic contigs as eukaryotic or prokaryotic
  ☆41Updated 2 years ago
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆27Updated 2 years ago