geronimp / graftM
GraftM - Rapid community profiles from metagenomes
☆45Updated 8 months ago
Alternatives and similar repositories for graftM:
Users that are interested in graftM are comparing it to the libraries listed below
- Estimate metagenomic coverage and sequence diversity☆48Updated 7 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆57Updated 5 years ago
- ☆49Updated 11 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆71Updated 5 years ago
- A toolbox for improving metagenome-assembled genomes.☆63Updated 3 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 11 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 10 months ago
- Improvement of metagenome-assembled genomes☆50Updated 5 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆58Updated 3 weeks ago
- IS mapping software☆53Updated 3 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆44Updated last month
- ☆24Updated 6 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆55Updated 2 weeks ago
- post processing of bacterial pangenome gene presence/absence matrices☆59Updated 3 weeks ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- Reorients assembled microbial sequences☆114Updated 2 weeks ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆19Updated 2 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆67Updated last year
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 9 months ago
- Split Kmer Analysis☆62Updated 2 years ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆33Updated 3 months ago
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆60Updated 2 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆48Updated 8 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆75Updated 7 months ago