chevrettelab / gator-gcLinks
☆21Updated 6 months ago
Alternatives and similar repositories for gator-gc
Users that are interested in gator-gc are comparing it to the libraries listed below
Sorting:
- Bioinformatic Tools for study Evolution of metabolic diversity☆38Updated last year
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆40Updated 3 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆51Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 9 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated 2 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Updated 9 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆76Updated 9 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Updated 4 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆24Updated 2 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆63Updated 9 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆28Updated this week
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆92Updated 5 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆70Updated 3 weeks ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆24Updated 11 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated 4 months ago
- Pipeline for major biological analyses.☆36Updated 3 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆57Updated 7 months ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆24Updated last week
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated 2 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆82Updated 2 months ago
- Locate antiviral defence systems in prokaryotic genomes☆64Updated last year
- ☆42Updated 7 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated 2 weeks ago
- ☆38Updated 2 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆83Updated 2 weeks ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆45Updated 2 years ago
- The viral taxonomic assignment pipeline☆42Updated 3 weeks ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆95Updated 7 months ago
- ☆22Updated 3 years ago