quevan / phlameLinks
☆13Updated 3 months ago
Alternatives and similar repositories for phlame
Users that are interested in phlame are comparing it to the libraries listed below
Sorting:
- Calculate assocations between genes and traits☆29Updated 8 months ago
- Bacterial GWAS analysis☆46Updated last month
- ☆26Updated 2 years ago
- Gene Absence Presence Identification tool.☆27Updated 8 months ago
- ☆14Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆51Updated 2 months ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆52Updated last year
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆60Updated last week
- Discover and annotate the virome☆54Updated last month
- Phage-Host Interaction Search Tool☆29Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆69Updated this week
- ☆28Updated 10 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 7 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated 2 months ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆41Updated 2 years ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆39Updated 2 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Interpretative standards for AMR genotypes☆26Updated 3 weeks ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Recombination-free trees☆60Updated 2 months ago
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 4 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- ☆13Updated 8 years ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- MAG Circularization Method☆32Updated 3 weeks ago
- zDB: comparative bacterial genomics made easy☆36Updated 3 weeks ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated last year