Alternatives and similar repositories for phlame

Users that are interested in phlame are comparing it to the libraries listed below

• refresh-bio / PHIST
  Phage-Host Interaction Search Tool
  ☆29Updated last year
• raufs / skDER
  skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.
  ☆49Updated last month
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆50Updated last year
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆37Updated 2 years ago
• WangLab-SCSIO / Prophage_Tracer
  Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment
  ☆24Updated last year
• AlexanderLabWHOI / EukHeist
  ☆26Updated 2 years ago
• MrTomRod / scoary-2
  Calculate assocations between genes and traits
  ☆28Updated 7 months ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆64Updated last week
• MigleSur / GenAPI
  Gene Absence Presence Identification tool.
  ☆27Updated 7 months ago
• apcamargo / prodigal-gv
  A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes
  ☆40Updated 2 years ago
• boulund / phaster_scripts
  Small utility script to submit genomes to PHASTER for phage detection
  ☆24Updated 4 years ago
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago
• MattiaPandolfoVR / MetaPhage
  ☆38Updated last year
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆45Updated last week
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆53Updated 2 weeks ago
• HIT-ImmunologyLab / DBSCAN-SWA
  ☆33Updated last year
• yosuken / MAGRE
  ☆12Updated 4 years ago
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆31Updated last month
• wbazant / CORRAL
  ☆14Updated 2 years ago
• leaemiliepradier / PlasForest
  A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
  ☆19Updated 2 years ago
• AroneyS / binchicken
  Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly
  ☆48Updated last month
• EBI-Metagenomics / genome_uploader
  Python script to upload bins and MAGs to ENA (European Nucleotide Archive)
  ☆25Updated last week
• dib-lab / charcoal
  Remove contaminated contigs from genomes using k-mers and taxonomies.
  ☆59Updated 2 years ago
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆37Updated last week
• gtonkinhill / panstripe
  post processing of bacterial pangenome gene presence/absence matrices
  ☆61Updated 8 months ago
• amillard / tax_myPHAGE
  Workflow to assign Taxonomy to a bacteriophage genome isolate
  ☆34Updated 7 months ago
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆22Updated last year
• linsalrob / sphae
  Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
  ☆39Updated last month
• chg60 / DEPhT
  Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences
  ☆21Updated 10 months ago
• Yasas1994 / Jaeger
  Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
  ☆35Updated last week