Alternatives and similar repositories for gRodon:

Users that are interested in gRodon are comparing it to the libraries listed below

• WatsonLab / MAGpy
  Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)
  ☆62Updated last year
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆20Updated last year
• ohlab / GRiD
  Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …
  ☆32Updated 4 years ago
• Gibbons-Lab / isb_course_2023
  Materials and presentation for the 2023 ISB Microbiome course.
  ☆24Updated 5 months ago
• lozuponelab / SCNIC
  Sparse Cooccurence Network Investigation for Compositional data
  ☆24Updated 4 months ago
• weisberglab / beav
  BEAV: Bacterial Element Annotation reVamped
  ☆61Updated 4 months ago
• jlw-ecoevo / gRodon2
  ☆40Updated 7 months ago
• Gibbons-Lab / pipelines
  Pipelines used in the lab.
  ☆11Updated 4 months ago
• snayfach / MicrobeCensus
  MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
  ☆43Updated 4 years ago
• statdivlab / radEmu
  ☆53Updated 2 weeks ago
• allind / EukDetect
  ☆49Updated 10 months ago
• christophertbrown / iRep
  scripts for estimating bacteria replication rates based on population genome copy number variation
  ☆70Updated 5 years ago
• EBI-Metagenomics / EukCC
  Tool to estimate genome quality of microbial eukaryotes
  ☆36Updated last month
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆50Updated 4 years ago
• metagenopolis / CroCoDeEL
  CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
  ☆22Updated this week
• leylabmpi / Struo
  Ley Lab MetaGenome Profiler DataBase generator
  ☆49Updated 2 years ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆54Updated this week
• functional-dark-side / agnostos-wf
  ☆45Updated last year
• victoriapascal / gutsmash
  gutSMASH
  ☆53Updated 2 months ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆53Updated 2 years ago
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆25Updated last year
• microUCPH / amplicon_data_analysis
  Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project
  ☆11Updated 2 years ago
• flass / pantagruel
  a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
  ☆48Updated 2 years ago
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆28Updated last year
• biobakery / maaslin3
  MaAsLin3: Microbiome Multivariate Association with Linear Models
  ☆29Updated this week
• Russel88 / MAGinator
  MAGinator - Accurate SNV calling and profiling of MAGs
  ☆21Updated last month
• arumugamlab / MIntO
  Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data
  ☆14Updated this week
• shenwei356 / gtdb-taxdump
  GTDB taxonomy taxdump files with trackable TaxIds
  ☆52Updated 10 months ago
• geronimp / graftM
  GraftM - Rapid community profiles from metagenomes
  ☆44Updated 7 months ago
• eead-csic-compbio / metagenome_Pfam_score
  Protocol for finding informative protein families and then using them to score metagenomic sets.
  ☆9Updated 3 years ago