jlw-ecoevo / gRodonLinks
☆17Updated 2 years ago
Alternatives and similar repositories for gRodon
Users that are interested in gRodon are comparing it to the libraries listed below
Sorting:
- Metagenomics-related extended functionalities to samtools☆21Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- ☆56Updated this week
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆49Updated last year
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆62Updated 11 months ago
- BEAV: Bacterial Element Annotation reVamped☆66Updated 9 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated 10 months ago
- Pipelines used in the lab.☆13Updated 4 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 2 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 5 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 9 months ago
- Bioinformatics Tools☆89Updated this week
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆67Updated last year
- Using ggtree to build phylogenetic trees☆47Updated 9 months ago
- GraftM - Rapid community profiles from metagenomes☆46Updated last year
- Vanilla regression methods for microbiome differential abundance analysis☆59Updated 4 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- gutSMASH☆55Updated 7 months ago
- ☆73Updated last week
- ☆41Updated 4 years ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated last week
- Statistical analysis for sparse high-throughput sequencing☆70Updated 7 months ago
- Speedy versions of phyloseq functions☆48Updated last year
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 2 years ago