jlw-ecoevo / gRodon
☆17Updated 2 years ago
Alternatives and similar repositories for gRodon
Users that are interested in gRodon are comparing it to the libraries listed below
Sorting:
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 6 months ago
- BEAV: Bacterial Element Annotation reVamped☆65Updated 6 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 4 years ago
- Pipelines used in the lab.☆12Updated last month
- Tool to estimate genome quality of microbial eukaryotes☆37Updated 3 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- ☆55Updated this week
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated 7 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆48Updated 2 years ago
- gutSMASH☆53Updated 4 months ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆47Updated last year
- ☆50Updated last year
- A set of R scripts for the analysis of microbial profiles☆41Updated 11 months ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated this week
- Protocol for finding informative protein families and then using them to score metagenomic sets.☆9Updated 3 years ago
- Plot microbiome time series in parallel☆26Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated 2 weeks ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated 2 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆58Updated 8 months ago
- ☆45Updated last year
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- Add new taxa or taxonomic groups to the NCBI Taxdump files☆20Updated 5 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 2 weeks ago
- KEGG Module Evaluation Tool☆29Updated last year