☆18Dec 2, 2022Updated 3 years ago
Alternatives and similar repositories for gRodon
Users that are interested in gRodon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- ☆55Mar 29, 2026Updated 2 months ago
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆19Aug 16, 2021Updated 4 years ago
- Analysis of Microbial Growth Assays☆17Mar 12, 2025Updated last year
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Dec 7, 2021Updated 4 years ago
- Python package simulating artificial selection on microbial communities☆15Aug 15, 2023Updated 2 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆18Nov 24, 2025Updated 6 months ago
- Analysis of ensembles of metabolic network reconstructions☆22May 20, 2026Updated 3 weeks ago
- A pipeline for whole genome assembly☆16Apr 21, 2022Updated 4 years ago
- ☆28Feb 27, 2024Updated 2 years ago
- Materials and presentations for the 2021 ISB Virtual Microbiome Series.☆29Mar 8, 2023Updated 3 years ago
- mapping files for MetaCyc pathway☆13Sep 14, 2019Updated 6 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆27Dec 20, 2023Updated 2 years ago
- Minimal Supplying Community Search with constraint-based optimization methods.☆16Updated this week
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Dec 27, 2025Updated 5 months ago
- ☆22Dec 9, 2023Updated 2 years ago
- This contains all the files and scripts necessary to participate in the FTICR-MS data analysis demonstration at the SBR SFA Community Wor…☆18Jul 8, 2020Updated 5 years ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆36May 25, 2026Updated 3 weeks ago
- Tools for extracting individual genomes from metagenomes☆16Dec 4, 2023Updated 2 years ago
- A collection of functions compatible with the Opentrons API☆10Oct 28, 2022Updated 3 years ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆27Nov 2, 2025Updated 7 months ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- ☆21Mar 15, 2023Updated 3 years ago
- ☆13May 31, 2026Updated 2 weeks ago
- Python interface for running COMETS simulations and analyzing the results☆16May 19, 2026Updated 3 weeks ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆19Mar 17, 2021Updated 5 years ago
- This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens…☆11Aug 1, 2023Updated 2 years ago
- ☆27Jun 20, 2023Updated 2 years ago
- Companion notebooks for "Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks"☆11Jul 13, 2018Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A comprehensive prokaryotic genome annotation pipeline☆87Jun 3, 2026Updated 2 weeks ago
- A command-line tool for profiling CAZyme abundances in metagenomic datasets.☆38Updated this week
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆19Feb 5, 2022Updated 4 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 6 years ago
- Community detection method for multidimensional networks☆11Mar 3, 2025Updated last year
- An implementation of the prediction strength algorithm from Tibshirani, Walther, Botstein, and Brown's "Cluster validation by prediction …☆18Feb 17, 2011Updated 15 years ago
- ☆10Jul 4, 2019Updated 6 years ago