mblstamps / stamps2022
Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA
☆20Updated 2 years ago
Alternatives and similar repositories for stamps2022:
Users that are interested in stamps2022 are comparing it to the libraries listed below
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated 10 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- Maximum Likelihood Amplicon Pipeline☆22Updated 8 months ago
- MAG Circularization Method☆33Updated 2 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 9 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 2 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 3 months ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Working with the outputs of sourmash in R☆26Updated last year
- A Shotgun Metagenome Annotation Pipeline☆23Updated 7 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆36Updated 4 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated last year
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- ☆13Updated last year
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 3 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- ☆22Updated last year
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆32Updated 5 years ago
- Dadaist2 🟨 Highway to R☆13Updated 2 weeks ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆36Updated 10 months ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- Metagenomic Estimation of Dietary Intake and Content.☆15Updated this week
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆53Updated 4 months ago
- tidyMicro GitHup Repository☆18Updated 3 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last month
- Tools for analyzing trees☆14Updated last year
- ☆13Updated 4 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆20Updated 6 years ago