mblstamps / stamps2022
Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA
☆21Updated 2 years ago
Alternatives and similar repositories for stamps2022
Users that are interested in stamps2022 are comparing it to the libraries listed below
Sorting:
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆58Updated 8 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Working with the outputs of sourmash in R☆27Updated last year
- Assessing and Improving the quality of metagenomic assemblies☆28Updated 3 years ago
- ☆21Updated 3 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 7 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last year
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 years ago
- ☆13Updated 5 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 11 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 10 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- MAG Circularization Method☆33Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 4 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Influenza genome analysis Nextflow workflow☆22Updated last month
- A comprehensive pipeline for short read metagenomic data☆24Updated 4 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated 10 months ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated last month
- MicrobeDirectory 2.0☆22Updated 4 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆37Updated 8 months ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆17Updated 6 months ago
- Strain Resolution ON Graphs☆47Updated last year