metagentools / gbintkLinks
π𧬠GraphBin-Tk: assembly graph-based metagenomic binning toolkit
β12Updated 3 months ago
Alternatives and similar repositories for gbintk
Users that are interested in gbintk are comparing it to the libraries listed below
Sorting:
- Fast pairwise transmission inference from single genome and/or metagenomic dataβ21Updated last month
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.β49Updated last month
- Code used to analyse and plot metadata of metagenomic binning toolsβ14Updated last year
- Genome size estimation from long read overlapsβ59Updated this week
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketchesβ47Updated last month
- Bacterial GWAS analysisβ43Updated last month
- β20Updated this week
- A taxonomic classifier of plasmidsβ28Updated 4 years ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.β24Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.β53Updated 4 months ago
- A microbial genomic analysis pipeline used by the Djordjevic Labβ12Updated 6 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.β59Updated last year
- Miscellaneous Perl scripts from 20 years in microbial bioinformaticsβ17Updated last year
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomesβ11Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictorsβ25Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigsβ29Updated 2 years ago
- Phylogenetic compression of extremely large genome collections [661k βππ²ππΆπ | BIGSIdata βπ°π΄ππΆπ | AllTheBact'23 βπ³π±ππΆπ]β41Updated 5 months ago
- Microbial agile accurate SNP Typerβ30Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)β24Updated last week
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architectureβ37Updated 3 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.β33Updated last month
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomesβ19Updated 2 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenomeβ30Updated this week
- Calculate assocations between genes and traitsβ25Updated 5 months ago
- Finding regions of similarity between plasmidsβ16Updated 2 years ago
- β24Updated 7 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignmentβ61Updated 2 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGsβ24Updated last year
- Plasmid analysis using rearrangement distancesβ45Updated 3 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGsβ23Updated 2 years ago