metagentools / gbintkLinks
π𧬠GraphBin-Tk: assembly graph-based metagenomic binning toolkit
β21Updated 5 months ago
Alternatives and similar repositories for gbintk
Users that are interested in gbintk are comparing it to the libraries listed below
Sorting:
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.β35Updated this week
- Fast pairwise transmission inference from single genome and/or metagenomic dataβ22Updated 3 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)β25Updated this week
- Identify and remove contaminants from metagenome-assembled genomesβ18Updated last year
- Code used to analyse and plot metadata of metagenomic binning toolsβ14Updated last year
- Downstream processing of VAMB binning for Viral Elucidationβ51Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.β59Updated 2 years ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.β40Updated 2 weeks ago
- π¦π§¬ Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphsβ67Updated last year
- Phylogenetic compression of extremely large genome collections [661k βππ²ππΆπ | BIGSIdata βπ°π΄ππΆπ | AllTheBact'23 βπ³π±ππΆπ]β43Updated 7 months ago
- Recombination-free treesβ60Updated 2 months ago
- A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inferenceβ38Updated last week
- A workflow and scripts for large-scale antiSMASH analysesβ46Updated 7 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architectureβ39Updated 3 years ago
- β23Updated this week
- Bacterial GWAS analysisβ46Updated 3 weeks ago
- Classify metagenomic contigs as eukaryotic or prokaryoticβ41Updated 2 years ago
- A taxonomic classifier of plasmidsβ28Updated 4 years ago
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/plβ¦β30Updated last year
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGsβ23Updated 2 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolateβ35Updated 7 months ago
- Prophage Activity Estimatorβ28Updated last year
- PLSDB pipeline to collect bacterial plasmids from NCBIβ39Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genesβ35Updated 6 months ago
- Order and orientation of complete bacterial genomesβ29Updated 4 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!β39Updated 2 months ago
- KEGG Module Evaluation Toolβ32Updated 2 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolatesβ81Updated last month
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological dataβ42Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculatorβ44Updated 3 months ago