Alternatives and similar repositories for gbintk

Users that are interested in gbintk are comparing it to the libraries listed below

• gtonkinhill / tracs
  Fast pairwise transmission inference from single genome and/or metagenomic data
  ☆23Updated 6 months ago
• Yasas1994 / Jaeger
  Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
  ☆35Updated 2 weeks ago
• centre-pathogen-genomics / snippy-ng
  ☆25Updated this week
• cruizperez / FastAAI
  ☆25Updated last year
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆63Updated 9 months ago
• MrTomRod / scoary-2
  Calculate assocations between genes and traits
  ☆29Updated 11 months ago
• dib-lab / charcoal
  Remove contaminated contigs from genomes using k-mers and taxonomies.
  ☆59Updated 2 years ago
• metagentools / metagenomic_binning_review
  Code used to analyse and plot metadata of metagenomic binning tools
  ☆14Updated last year
• iqbal-lab-org / pling
  Plasmid analysis using rearrangement distances
  ☆50Updated 2 weeks ago
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆40Updated 4 years ago
• leaemiliepradier / PlasForest
  A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
  ☆20Updated 2 years ago
• NickJD / ORForise
  Comparison pipeline for Prokaryote Protein Coding Gene Predictors
  ☆28Updated this week
• rrwick / Verticall
  Recombination-free trees
  ☆63Updated 5 months ago
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆35Updated 9 months ago
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆46Updated 3 weeks ago
• rrwick / Circular-Contig-Extractor
  ☆15Updated 11 months ago
• EBI-Metagenomics / genome_uploader
  Python script to upload bins and MAGs to ENA (European Nucleotide Archive)
  ☆25Updated this week
• apcamargo / magpurify2
  Identify and remove contaminants from metagenome-assembled genomes
  ☆18Updated last year
• LottePronk / whokaryote
  Classify metagenomic contigs as eukaryotic or prokaryotic
  ☆43Updated 2 years ago
• amillard / tax_myPHAGE
  Workflow to assign Taxonomy to a bacteriophage genome isolate
  ☆38Updated 10 months ago
• tseemann / scripts
  Miscellaneous Perl scripts from 20 years in microbial bioinformatics
  ☆18Updated last year
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆46Updated 10 months ago
• JensUweUlrich / Taxor
  Fast and space-efficient taxonomic classification of long reads
  ☆43Updated 5 months ago
• santirdnd / COPLA
  A taxonomic classifier of plasmids
  ☆28Updated 4 years ago
• Shamir-Lab / PlasClass
  A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…
  ☆32Updated last year
• metagenlab / zDB
  zDB: comparative bacterial genomics made easy
  ☆38Updated last week
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆30Updated 2 years ago
• EnvGen / POGENOM
  Population genomics from metagenomes
  ☆12Updated last year
• lazzarigioele / graphanalyzer
  This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…
  ☆19Updated 2 years ago
• treangenlab / lemur
  Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
  ☆25Updated 6 months ago