Lightweight bioinformatics pipeline for microbial genome recovery
☆18Oct 23, 2025Updated 9 months ago
Alternatives and similar repositories for mmlong2-lite
Users that are interested in mmlong2-lite are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆37Apr 10, 2026Updated 4 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆56Oct 24, 2025Updated 9 months ago
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆16Aug 28, 2024Updated last year
- ☆21Apr 20, 2026Updated 3 months ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 7 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data☆12Mar 8, 2025Updated last year
- ☆10Jun 9, 2025Updated last year
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 3 years ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆24Jun 3, 2025Updated last year
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13May 12, 2022Updated 4 years ago
- ☆15Jul 24, 2026Updated 3 weeks ago
- Overview of our data for microbial genomic benchmarking☆41Jun 19, 2026Updated last month
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆79Jul 29, 2026Updated 2 weeks ago
- ☆36Aug 7, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆74May 20, 2022Updated 4 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆72Jul 16, 2026Updated last month
- A new high-resolution long-read metagenome assembler for even noisy reads☆163Jul 3, 2026Updated last month
- Fast and space-efficient taxonomic classification of long reads☆46Jul 16, 2026Updated last month
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Dec 7, 2021Updated 4 years ago
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 8 months ago
- ☆23Jan 6, 2026Updated 7 months ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆54Jul 10, 2026Updated last month
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆25Jun 26, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A workflow and scripts for large-scale antiSMASH analyses☆51Apr 3, 2025Updated last year
- A toolkit for prokaryotic comparative genomics☆52Feb 23, 2026Updated 5 months ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆23Jul 11, 2026Updated last month
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆228May 9, 2026Updated 3 months ago
- http://huttenhower.sph.harvard.edu/waafle☆24Jun 16, 2026Updated 2 months ago
- TransAnnot - a fast transcriptome annotation pipeline☆20Jan 22, 2025Updated last year
- Bioinformatics program inStrain☆192Mar 12, 2026Updated 5 months ago
- Chimera: A Versatile Metagenomic Classification Tool☆21Updated this week
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- fast sequence evolution simulation for SARS-CoV-2 and similar☆24Apr 11, 2025Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆38Feb 26, 2023Updated 3 years ago
- Plasmid annotation pipeline☆17Oct 1, 2025Updated 10 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆174Aug 3, 2026Updated 2 weeks ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆116Aug 5, 2026Updated 2 weeks ago
- Metagenomic binning based on Hi-C data☆30Aug 7, 2025Updated last year
- ☆27Jun 20, 2023Updated 3 years ago