Serka-M / mmlong2-liteLinks
Lightweight bioinformatics pipeline for microbial genome recovery
☆13Updated 2 months ago
Alternatives and similar repositories for mmlong2-lite
Users that are interested in mmlong2-lite are comparing it to the libraries listed below
Sorting:
- Reorients assembled microbial sequences☆125Updated last week
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆70Updated 4 years ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆29Updated this week
- Mobile Genetic Elements Retrieving Tool☆15Updated 3 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆47Updated 2 years ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆32Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆73Updated 2 months ago
- Tools to analyze the differences and similarities between CRISPR arrays☆11Updated 8 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆52Updated last month
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 6 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆140Updated last week
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated last year
- Bioinformatics tool to find integrons in bacterial genomes☆81Updated 3 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated 2 months ago
- ☆25Updated 6 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆38Updated 2 months ago
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13Updated 3 years ago
- ☆35Updated last year
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 3 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆80Updated last year
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆42Updated 4 years ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- A tool for removing redundant genomes from a set of assemblies☆76Updated 2 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆48Updated 4 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆74Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 4 months ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 5 years ago
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆15Updated last year
- Prediction of prophages from bacterial genomes☆79Updated 2 months ago