☆56Oct 2, 2023Updated 2 years ago
Alternatives and similar repositories for RNABERT
Users that are interested in RNABERT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nature Methods: RNA foundation model (together with RhoFold)☆367May 27, 2025Updated 11 months ago
- ☆29Nov 6, 2022Updated 3 years ago
- A repository for neural representational learning of RNA secondary structures☆32Feb 13, 2020Updated 6 years ago
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆69Jul 22, 2024Updated last year
- Easy & Pretrained SOTA Deep Learning for RNA strings☆12Apr 15, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An analysis of a new experimentally-derived nucleic acid binding chemical library☆28Jan 27, 2023Updated 3 years ago
- to assess structural quality of RNA using 3D CNN☆14Aug 17, 2018Updated 7 years ago
- GCNfold: A novel lightweight model with valid extractors for RNA secondary structure prediction☆14Jul 23, 2023Updated 2 years ago
- RNA Multiple Sequence Alignment☆51Jul 20, 2023Updated 2 years ago
- ☆13Dec 6, 2022Updated 3 years ago
- ☆22Jan 18, 2026Updated 3 months ago
- ☆43Oct 1, 2023Updated 2 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆65Apr 3, 2026Updated last month
- Probabilistic Transformer: Modelling Ambiguities and Distributions for RNA Folding and Molecule Design☆18Aug 7, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆107May 23, 2025Updated 11 months ago
- ☆20Oct 18, 2024Updated last year
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆15Jul 2, 2023Updated 2 years ago
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆21Apr 5, 2024Updated 2 years ago
- ☆22Jul 21, 2023Updated 2 years ago
- Fourth place solution to the "OpenVaccine: COVID-19 mRNA Vaccine Degradation Prediction" organized by Stanford University and Kaggle☆21Oct 16, 2020Updated 5 years ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆51Nov 23, 2023Updated 2 years ago
- RIblast is ultrafast RNA-RNA interaction prediction software based on seed-and-extension algorithm for comprehensive lncRNA interactome a…☆18May 9, 2023Updated 2 years ago
- Source code of the Stanford Ribonanza RNA Folding first place solution☆41Dec 21, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆37Jan 14, 2025Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆19Dec 19, 2024Updated last year
- ☆19Mar 21, 2024Updated 2 years ago
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- GCN implementation for RNA-small molecule binding prediction. (https://academic.oup.com/nar/article/48/14/7690/5870337)☆16Nov 28, 2023Updated 2 years ago
- We propose PepBCL, a novel BERT (Bidirectional Encoder Representation from Transformers)-based Contrastive Learning framework to predict …☆16Mar 29, 2023Updated 3 years ago
- Taxonomic classification of DNA sequences☆57Jul 2, 2024Updated last year
- A Python package for landscape genomic simulation☆12Dec 15, 2025Updated 4 months ago
- Software for the analysis and visualization of site-saturation mutagenesis experiments☆19Apr 21, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆25Dec 21, 2022Updated 3 years ago
- Repository for mRNA Paper and CodonBERT publication.☆144Jun 12, 2024Updated last year
- a deep learning architecture for RNA-ligand binding sites prediction☆18Jan 21, 2024Updated 2 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆20May 14, 2021Updated 4 years ago
- Differentiable RNA folding in JAX☆28Mar 25, 2025Updated last year
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆12Jan 2, 2025Updated last year
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Oct 15, 2018Updated 7 years ago