☆57Oct 2, 2023Updated 2 years ago
Alternatives and similar repositories for RNABERT
Users that are interested in RNABERT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nature Methods: RNA foundation model (together with RhoFold)☆390May 27, 2025Updated last year
- ☆30Nov 6, 2022Updated 3 years ago
- Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆70Jul 22, 2024Updated 2 years ago
- A repository for neural representational learning of RNA secondary structures☆33Feb 13, 2020Updated 6 years ago
- Easy & Pretrained SOTA Deep Learning for RNA strings☆12Apr 15, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GCNfold: A novel lightweight model with valid extractors for RNA secondary structure prediction☆13Jul 23, 2023Updated 3 years ago
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- RNA Multiple Sequence Alignment☆53Jul 20, 2023Updated 3 years ago
- ☆13Dec 6, 2022Updated 3 years ago
- ☆17Jun 22, 2024Updated 2 years ago
- ☆43Oct 1, 2023Updated 2 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆70May 8, 2026Updated 3 months ago
- to assess structural quality of RNA using 3D CNN☆15Aug 17, 2018Updated 8 years ago
- Probabilistic Transformer: Modelling Ambiguities and Distributions for RNA Folding and Molecule Design☆18Aug 7, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆21Apr 5, 2024Updated 2 years ago
- ☆25Jul 21, 2023Updated 3 years ago
- Fourth place solution to the "OpenVaccine: COVID-19 mRNA Vaccine Degradation Prediction" organized by Stanford University and Kaggle☆21Oct 16, 2020Updated 5 years ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆52Nov 23, 2023Updated 2 years ago
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆13Jan 2, 2025Updated last year
- Source code of the Stanford Ribonanza RNA Folding first place solution☆42Dec 21, 2023Updated 2 years ago
- GCN implementation for RNA-small molecule binding prediction. (https://academic.oup.com/nar/article/48/14/7690/5870337)☆16Nov 28, 2023Updated 2 years ago
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- We propose PepBCL, a novel BERT (Bidirectional Encoder Representation from Transformers)-based Contrastive Learning framework to predict …☆19Mar 29, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Taxonomic classification of DNA sequences☆57Jul 2, 2024Updated 2 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆25Dec 21, 2022Updated 3 years ago
- Repository for mRNA Paper and CodonBERT publication.☆146May 19, 2026Updated 3 months ago
- Software for the analysis and visualization of site-saturation mutagenesis experiments☆19Apr 21, 2023Updated 3 years ago
- A Python package for landscape genomic simulation☆13Dec 15, 2025Updated 8 months ago
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆25Aug 6, 2026Updated 3 weeks ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Oct 15, 2018Updated 7 years ago
- ☆21Jul 16, 2024Updated 2 years ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆19Apr 11, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆19Jul 19, 2025Updated last year
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Oct 12, 2022Updated 3 years ago
- An Interpretable Self-Attention Network with block-attention and attention-attribution.☆12Sep 22, 2023Updated 2 years ago
- Pipeline for protein-protein interaction prediction☆27Feb 22, 2022Updated 4 years ago
- ☆11Feb 10, 2025Updated last year
- ☆96Oct 9, 2024Updated last year
- RiboNucleic Acid (RNA) Language Model☆173May 4, 2026Updated 3 months ago