Alternatives and similar repositories for PEPPI

Users that are interested in PEPPI are comparing it to the libraries listed below

• SNU-CSSB / RF2-Lite
  ☆33Updated last year
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆65Updated last month
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆34Updated last year
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆56Updated 5 months ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆63Updated 10 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆57Updated last year
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆58Updated 6 months ago
• minmarg / gtalign_alpha
  GTalign, high-performance protein structure alignment, superposition and search
  ☆54Updated 5 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆46Updated 8 months ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆50Updated 9 months ago
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆56Updated last year
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆29Updated 11 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆60Updated 4 years ago
• haddocking / haddock-tools
  Set of useful HADDOCK utility scripts
  ☆57Updated 4 months ago
• cmbi / dssp
  The DSSP building software
  ☆50Updated 2 years ago
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆39Updated this week
• JudeWells / chainsaw
  ☆47Updated last year
• gwlilabmit / FragFold
  Fragment binding prediction with ColabFold
  ☆41Updated 2 months ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated 7 months ago
• ohuelab / SpatialPPI
  ☆11Updated last year
• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆63Updated 2 years ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆45Updated last year
• amirpandi / Deep_AMP
  Generator and regressor neural networks for antimicrobial peptides
  ☆25Updated 2 years ago
• Wang-Lin-boop / GetPDB
  Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…
  ☆46Updated last year
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆39Updated last year
• akiyamalab / MEGADOCK
  An ultra-high-performance protein-protein docking for heterogeneous supercomputers
  ☆71Updated 2 years ago
• Wang-Lin-boop / PPI-Miner
  A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design
  ☆20Updated 11 months ago
• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆40Updated 2 months ago