Alternatives and similar repositories for PEPPI:

Users that are interested in PEPPI are comparing it to the libraries listed below

• SNU-CSSB / RF2-Lite
  ☆25Updated 8 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 8 months ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆29Updated 2 weeks ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆34Updated last year
• minmarg / gtalign_alpha
  GTalign, HPC protein structure alignment, superposition and search (alpha release)
  ☆41Updated last month
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆21Updated 6 months ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆52Updated 2 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆81Updated 10 months ago
• MPI-Dortmund / pymissense
  PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
  ☆23Updated last year
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated last year
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆56Updated 2 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆33Updated 2 months ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆30Updated 6 years ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆32Updated 2 years ago
• CSUBioGroup / DPFunc
  ☆22Updated last month
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆37Updated 3 months ago
• UCLOrengoGroup / cath-alphaflow
  ☆17Updated 2 months ago
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆22Updated last year
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆25Updated this week
• elaspic / elaspic2
  Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…
  ☆19Updated 3 years ago
• DeepRank / PSSMGen
  Generates consistent PSSM and/or PDB files for protein-protein complexes
  ☆19Updated 2 years ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆42Updated 11 months ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆47Updated 2 months ago
• maranasgroup / CatPred
  Machine Learning models for in vitro enzyme kinetic parameter prediction
  ☆20Updated 3 weeks ago
• PDB-REDO / AlphaBridge
  ☆32Updated 2 months ago
• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆54Updated last year
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆34Updated 2 years ago
• JudeWells / chainsaw
  ☆31Updated 4 months ago
• lehner-lab / doubledeepms
  Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…
  ☆19Updated last year
• swanss / FragFold
  ☆21Updated last month