Arnie-based DegScore tool.
☆27Sep 30, 2022Updated 3 years ago
Alternatives and similar repositories for DegScore
Users that are interested in DegScore are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆23Sep 7, 2023Updated 2 years ago
- Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.☆107Nov 20, 2025Updated 5 months ago
- Easy & Pretrained SOTA Deep Learning for RNA strings☆12Apr 15, 2022Updated 4 years ago
- Draw RNA secondary structures in python.☆52Jun 24, 2025Updated 10 months ago
- ☆56Sep 11, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆51Nov 23, 2023Updated 2 years ago
- ☆12Oct 10, 2024Updated last year
- Repository for PFRED GUI codes☆10Feb 25, 2020Updated 6 years ago
- ☆16May 22, 2025Updated 11 months ago
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆56Jan 12, 2026Updated 3 months ago
- ☆11Jan 15, 2021Updated 5 years ago
- ☆17Jun 22, 2024Updated last year
- R package for response-surface methodology☆19Mar 24, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The Nosana Dashboard.☆19Apr 14, 2026Updated 2 weeks ago
- Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities☆35May 24, 2024Updated last year
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- SuperFolder COVID mRNA vaccines, stabilized for in vitro storage and shipping☆91Jan 14, 2022Updated 4 years ago
- A deep learning method for the prediction of internal ribosome entry sites (IRES) of circRNAs☆17Jul 6, 2025Updated 9 months ago
- Resources for the BioML Challenge 2024: Bits to Binders☆19Aug 24, 2024Updated last year
- ☆43Jan 16, 2026Updated 3 months ago
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16Feb 6, 2026Updated 2 months ago
- ☆16Dec 18, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- HELM2NotationToolkit is the reference implementation of the new HELM 2 standard with support for ambiguous structures.☆11May 24, 2023Updated 2 years ago
- Protein language model trained on coding DNA☆54Oct 20, 2024Updated last year
- ☆10Mar 11, 2025Updated last year
- CV to use for PhD position applications☆22Sep 6, 2021Updated 4 years ago
- Nature Methods: RNA foundation model (together with RhoFold)☆367May 27, 2025Updated 11 months ago
- An insertion caller for Illumina paired-end WGS data.☆24Aug 22, 2025Updated 8 months ago
- Re-implementation of GP-GOMEA that attempts to be simpler to understand and use than the original.☆15Mar 31, 2026Updated last month
- Codon optimizer for tissue-specific expression☆17Sep 26, 2024Updated last year
- An implementation of the Equivariant Graph Neural Network (EGNN) layer type for DGL-PyTorch.☆15Dec 27, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Public repository for ShapeMapper 2 releases☆42Mar 27, 2026Updated last month
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆227May 29, 2025Updated 11 months ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs☆13Jun 28, 2024Updated last year
- ☆94Oct 9, 2024Updated last year
- ☆13Dec 5, 2024Updated last year
- A Multi-Operator Equivariant Framework for High-Performance Machine Learning Force Fields, supporting External Fields embedding and Physi…☆17Updated this week