eternagame / DegScoreLinks
Arnie-based DegScore tool.
☆27Updated 3 years ago
Alternatives and similar repositories for DegScore
Users that are interested in DegScore are comparing it to the libraries listed below
Sorting:
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆67Updated 3 years ago
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆23Updated 2 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 4 years ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆41Updated 11 months ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆51Updated 2 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆57Updated 6 years ago
- Draw RNA secondary structures in python.☆49Updated 7 months ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆75Updated 2 years ago
- GraphPart, a data partitioning method for ML on biological sequences☆33Updated 2 years ago
- Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"☆70Updated 2 years ago
- Python package and command line tool for epitope prediction☆52Updated last year
- RiboNN: predicting translation efficiencies from mRNA sequences☆50Updated 3 weeks ago
- ProCyon: A multimodal foundation model for protein phenotypes☆55Updated 2 months ago
- Evolutionary velocity with protein language models☆95Updated 2 months ago
- ☆33Updated 4 months ago
- surrogate quantitative interpretability for deepnets☆24Updated 5 months ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆60Updated last month
- ☆86Updated 2 years ago
- Cross-protein transfer learning for variant effect prediction☆20Updated 2 years ago
- Diverse Genomic Embedding Benchmark☆50Updated 5 months ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆17Updated 3 years ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆41Updated last year
- Species-aware DNA language modeling☆18Updated 3 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Updated 7 months ago
- Code repository for the SPOC tool for scoring binary AF-M predicitons.☆15Updated 9 months ago
- Phyla: Towards a Foundation Model for Phylogenetic Inference☆28Updated 2 months ago
- Mutation effects predicted from sequence co-variation☆72Updated 8 years ago