Alternatives and similar repositories for DegScore

Users that are interested in DegScore are comparing it to the libraries listed below

• DasLab / RiboGraphViz
  Visualize global properties of large RNAs using GraphViz force-directed layout.
  ☆21Updated last year
• mims-harvard / SPECTRA
  SPECTRA: Spectral framework for evaluation of biomedical AI models
  ☆39Updated 2 months ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆24Updated 3 months ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• eternagame / EternaBench
  Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.
  ☆17Updated 2 years ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆27Updated last year
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• VariantEffect / mavedb-api
  MaveDB API
  ☆13Updated this week
• ViennaRNA / RNAsketch
  Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.
  ☆21Updated 6 years ago
• DasLab / draw_rna
  Draw RNA secondary structures in python.
  ☆48Updated 9 months ago
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆66Updated 2 years ago
• hgbrian / biocolabs
  a collection of colabs useful for molecular biology
  ☆30Updated last year
• Doudna-lab / GARNET_DL
  ☆37Updated 4 months ago
• songlab-cal / CPT
  Cross-protein transfer learning for variant effect prediction
  ☆20Updated last year
• maslov-group / DR-BERT
  ☆24Updated 2 years ago
• haiyuan-yu-lab / PIONEER
  ☆25Updated 5 months ago
• JudeWells / chainsaw
  ☆39Updated 8 months ago
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆35Updated 8 months ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆48Updated 9 months ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆21Updated 2 weeks ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆38Updated 8 months ago
• sacdallago / biotrainer
  Biological prediction models made simple.
  ☆43Updated last month
• schumacherlab / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆26Updated last month
• kadiliissaar / DeePhase
  DeePhase predictor of homotypic liquid-liquid phase separation of proteins & the code associated with the paper "Learning the molecular g…
  ☆16Updated 3 years ago
• PaccMann / paccmann_predictor
  PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…
  ☆51Updated last year
• hendrixlab / bpRNA
  bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure
  ☆48Updated last year
• psp3dcg / LightRoseTTA
  The official pytorch implementation of "LightRoseTTA: High-efficient and Accurate Protein Structure Prediction Using an Ultra-Lightweight…
  ☆16Updated last month
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆42Updated 3 years ago
• Superzchen / iFeatureOmega-CLI
  iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…
  ☆32Updated last year