Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"
☆59Oct 8, 2024Updated last year
Alternatives and similar repositories for RNAErnie
Users that are interested in RNAErnie are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆70Jul 22, 2024Updated 2 years ago
- RiboNucleic Acid (RNA) Language Model☆175May 4, 2026Updated 4 months ago
- ☆11May 22, 2026Updated 3 months ago
- Code of a structure-enhanced RNA language model named ERNIE-RNA☆46May 3, 2026Updated 4 months ago
- Nature Methods: RNA foundation model (together with RhoFold)☆388May 27, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Foundation Language Model For Multilayer Regulation of RNA☆22Nov 30, 2025Updated 9 months ago
- ☆17Jun 22, 2024Updated 2 years ago
- ☆14Jan 18, 2024Updated 2 years ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Mar 24, 2021Updated 5 years ago
- ☆13Dec 6, 2022Updated 3 years ago
- ☆20Oct 18, 2024Updated last year
- ☆30May 15, 2023Updated 3 years ago
- RNA Multiple Sequence Alignment☆53Jul 20, 2023Updated 3 years ago
- Source code for the BUDE Alanine Scan web application.☆15May 27, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆77Oct 19, 2024Updated last year
- Protein language model trained on coding DNA☆56Oct 20, 2024Updated last year
- A collection of *fold* tools☆23Nov 10, 2022Updated 3 years ago
- ☆17Mar 26, 2024Updated 2 years ago
- ☆19Mar 31, 2025Updated last year
- Scalable Deep Learning for RNA Secondary Structure Prediction☆43Sep 23, 2025Updated 11 months ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆70May 8, 2026Updated 4 months ago
- a deep learning architecture for RNA-ligand binding sites prediction☆18Jan 21, 2024Updated 2 years ago
- Accelerate Molecular Biology Research with Machine Learning☆57Jul 24, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Nature Computational Science: RhoDesign is a structure-to-sequence model for RNA design.☆65Nov 8, 2024Updated last year
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆35Nov 22, 2024Updated last year
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆246May 29, 2025Updated last year
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆21Jul 11, 2024Updated 2 years ago
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆71Dec 29, 2024Updated last year
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆65Aug 2, 2024Updated 2 years ago
- ☆10Aug 20, 2023Updated 3 years ago
- ☆35Jan 14, 2025Updated last year
- Consensus peaks of chromatin accessibility in the human genome☆18Dec 1, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- We propose PepBCL, a novel BERT (Bidirectional Encoder Representation from Transformers)-based Contrastive Learning framework to predict …☆19Mar 29, 2023Updated 3 years ago
- ☆19May 15, 2026Updated 4 months ago
- Repository for mRNA Paper and CodonBERT publication.☆147May 19, 2026Updated 4 months ago
- Ctrl-DNA: Controllable Cell-Type-Specific Regulatory DNA Design via Constrained RL☆20May 28, 2025Updated last year
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆21Feb 6, 2023Updated 3 years ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆52Oct 4, 2024Updated last year
- Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information☆29Feb 26, 2024Updated 2 years ago