Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"
☆60Oct 8, 2024Updated 2 years ago
Alternatives and similar repositories for RNAErnie
Users that are interested in RNAErnie are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆71Jul 22, 2024Updated 2 years ago
- RiboNucleic Acid (RNA) Language Model☆180Oct 8, 2026Updated 3 weeks ago
- Code of a structure-enhanced RNA language model named ERNIE-RNA☆50May 3, 2026Updated 5 months ago
- deepSRAMP is a accurate deep learning model for predicting m6A sites by fusing the sequence and genomic position features☆14Nov 29, 2025Updated 11 months ago
- Nature Methods: RNA foundation model (together with RhoFold)☆394May 27, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Foundation Language Model For Multilayer Regulation of RNA☆22Nov 30, 2025Updated 11 months ago
- ☆37Jan 14, 2025Updated last year
- Accelerate Molecular Biology Research with Machine Learning☆57Updated this week
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆27Dec 3, 2024Updated last year
- ☆20Oct 18, 2024Updated 2 years ago
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆66Aug 2, 2024Updated 2 years ago
- ☆11Apr 1, 2025Updated last year
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆37Apr 3, 2021Updated 5 years ago
- ☆80Oct 19, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scalable Deep Learning for RNA Secondary Structure Prediction☆43Sep 23, 2025Updated last year
- ☆13Jul 31, 2025Updated last year
- BPfold: Deep generalizable prediction of RNA secondary structure via base pair motif energy.☆37May 27, 2026Updated 5 months ago
- Protein language model trained on coding DNA☆56Oct 20, 2024Updated 2 years ago
- Provide RNA and DNA Foundation Model Benchmarks and Applications☆29Nov 26, 2025Updated 11 months ago
- ☆79Apr 22, 2025Updated last year
- structRFM: A fully open structure-guided RNA foundation model for robust structural and functional inference☆42Aug 29, 2026Updated 2 months ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Mar 24, 2021Updated 5 years ago
- Primary RNA sequence model☆43May 20, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Dec 6, 2022Updated 3 years ago
- RNA Multiple Sequence Alignment☆53Jul 20, 2023Updated 3 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆72May 8, 2026Updated 5 months ago
- Reconstructing single-cell lineage history using mitochondrial mutation drift dynamics☆13Aug 22, 2026Updated 2 months ago
- Nature Computational Science: RhoDesign is a structure-to-sequence model for RNA design.☆66Nov 8, 2024Updated last year
- ☆14Jan 18, 2024Updated 2 years ago
- Generative Pretraining from Transcriptomes☆17Feb 6, 2023Updated 3 years ago
- ☆30May 15, 2023Updated 3 years ago
- ☆30Nov 6, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆248May 29, 2025Updated last year
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆36Nov 22, 2024Updated last year
- ☆12Jan 5, 2026Updated 9 months ago
- Python package for AAIndex databases (https://www.genome.jp/aaindex/)☆15Aug 7, 2026Updated 2 months ago
- Multi-Teacher Distillation for Protein embedding☆13May 31, 2024Updated 2 years ago
- A collection of *fold* tools☆23Nov 10, 2022Updated 3 years ago
- Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star☆387Updated this week