Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"
☆60Oct 8, 2024Updated last year
Alternatives and similar repositories for RNAErnie
Users that are interested in RNAErnie are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RiboNucleic Acid (RNA) Language Model☆159Oct 3, 2025Updated 6 months ago
- Code of a structure-enhanced RNA language model named ERNIE-RNA☆42Nov 19, 2025Updated 4 months ago
- ☆18Jun 22, 2024Updated last year
- ☆11Sep 3, 2025Updated 7 months ago
- Nature Methods: RNA foundation model (together with RhoFold)☆362May 27, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- RNA Multiple Sequence Alignment☆51Jul 20, 2023Updated 2 years ago
- ☆13Dec 6, 2022Updated 3 years ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Mar 24, 2021Updated 5 years ago
- ☆30May 15, 2023Updated 2 years ago
- ☆20Oct 18, 2024Updated last year
- ☆15Jul 21, 2025Updated 8 months ago
- ☆15Jan 18, 2024Updated 2 years ago
- Source code for the BUDE Alanine Scan web application.☆12May 27, 2025Updated 10 months ago
- ☆76Oct 19, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Protein language model trained on coding DNA☆54Oct 20, 2024Updated last year
- A collection of *fold* tools☆24Nov 10, 2022Updated 3 years ago
- Scalable Deep Learning for RNA Secondary Structure Prediction☆42Sep 23, 2025Updated 6 months ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆64Apr 3, 2026Updated last week
- ☆17Mar 26, 2024Updated 2 years ago
- ☆20Mar 31, 2025Updated last year
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆19Jul 11, 2024Updated last year
- a deep learning architecture for RNA-ligand binding sites prediction☆18Jan 21, 2024Updated 2 years ago
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆67Dec 29, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆32Nov 22, 2024Updated last year
- ☆37Jan 14, 2025Updated last year
- ☆10Aug 20, 2023Updated 2 years ago
- BulkFormer: A large-scale foundation model for human bulk transcriptomes☆50Dec 14, 2025Updated 3 months ago
- Code repository of "Deep generative design of RNA family sequences"☆40Updated this week
- Repository for mRNA Paper and CodonBERT publication.☆143Jun 12, 2024Updated last year
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆62Aug 2, 2024Updated last year
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆20Feb 6, 2023Updated 3 years ago
- A Foundation Language Model For Multilayer Regulation of RNA☆20Nov 30, 2025Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- We propose PepBCL, a novel BERT (Bidirectional Encoder Representation from Transformers)-based Contrastive Learning framework to predict …☆16Mar 29, 2023Updated 3 years ago
- ☆35Aug 26, 2022Updated 3 years ago
- Accelerate Molecular Biology Research with Machine Learning☆50Mar 29, 2026Updated last week
- ☆29Nov 6, 2022Updated 3 years ago
- Pipeline to calculate icSHAPE score in genome with sliding window strategy☆13Aug 23, 2022Updated 3 years ago
- Some scoring functions for predicting the effects of mutations on protein sequences using ESM-2☆11Dec 10, 2023Updated 2 years ago
- Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information☆29Feb 26, 2024Updated 2 years ago