Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"
☆60Oct 8, 2024Updated last year
Alternatives and similar repositories for RNAErnie
Users that are interested in RNAErnie are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RiboNucleic Acid (RNA) Language Model☆161Oct 3, 2025Updated 6 months ago
- Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆69Jul 22, 2024Updated last year
- Code of a structure-enhanced RNA language model named ERNIE-RNA☆41Nov 19, 2025Updated 5 months ago
- ☆17Jun 22, 2024Updated last year
- Nature Methods: RNA foundation model (together with RhoFold)☆367May 27, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13Dec 6, 2022Updated 3 years ago
- RNA Multiple Sequence Alignment☆51Jul 20, 2023Updated 2 years ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Mar 24, 2021Updated 5 years ago
- ☆30May 15, 2023Updated 2 years ago
- ☆20Oct 18, 2024Updated last year
- ☆17Jul 21, 2025Updated 9 months ago
- ☆14Jan 18, 2024Updated 2 years ago
- Source code for the BUDE Alanine Scan web application.☆12May 27, 2025Updated 11 months ago
- ☆76Oct 19, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Protein language model trained on coding DNA☆54Oct 20, 2024Updated last year
- A collection of *fold* tools☆24Nov 10, 2022Updated 3 years ago
- Scalable Deep Learning for RNA Secondary Structure Prediction☆42Sep 23, 2025Updated 7 months ago
- ☆17Mar 26, 2024Updated 2 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆65Apr 3, 2026Updated 3 weeks ago
- ☆20Mar 31, 2025Updated last year
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆20Jul 11, 2024Updated last year
- a deep learning architecture for RNA-ligand binding sites prediction☆18Jan 21, 2024Updated 2 years ago
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆33Nov 22, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Aug 20, 2023Updated 2 years ago
- Code repository of "Deep generative design of RNA family sequences"☆40Apr 8, 2026Updated 3 weeks ago
- BulkFormer: A large-scale foundation model for human bulk transcriptomes☆56Dec 14, 2025Updated 4 months ago
- Repository for mRNA Paper and CodonBERT publication.☆144Jun 12, 2024Updated last year
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆62Aug 2, 2024Updated last year
- A Foundation Language Model For Multilayer Regulation of RNA☆22Nov 30, 2025Updated 5 months ago
- We propose PepBCL, a novel BERT (Bidirectional Encoder Representation from Transformers)-based Contrastive Learning framework to predict …☆16Mar 29, 2023Updated 3 years ago
- ☆35Aug 26, 2022Updated 3 years ago
- Accelerate Molecular Biology Research with Machine Learning☆50Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆29Nov 6, 2022Updated 3 years ago
- Pipeline to calculate icSHAPE score in genome with sliding window strategy☆13Aug 23, 2022Updated 3 years ago
- Some scoring functions for predicting the effects of mutations on protein sequences using ESM-2☆11Dec 10, 2023Updated 2 years ago
- Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information☆29Feb 26, 2024Updated 2 years ago
- plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style☆17Dec 19, 2025Updated 4 months ago
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆227May 29, 2025Updated 11 months ago
- Improving gene isoform quantification with miniQuant☆41Jan 13, 2026Updated 3 months ago