Alternatives and similar repositories for deep-rna

Users that are interested in deep-rna are comparing it to the libraries listed below

• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆34Updated 3 months ago
• ratthachat / awesome-biochem-ai
  Curated list on Deep Transformers Applications on Biology and Chemistry
  ☆18Updated 2 years ago
• tadorfer / protlearn
  A Python package for extracting protein sequence features
  ☆62Updated 3 years ago
• babaling / DRPreter
  [IJMS 2022] DRPreter: Interpretable Anticancer Drug Response Prediction Using Knowledge-Guided Graph Neural Networks and Transformer
  ☆12Updated 3 years ago
• BGSU-RNA / fr3d-python
  Python implementation of the FR3D software for searching and annotating RNA 3D structures
  ☆20Updated this week
• liudan111 / PLM-interact
  PLM-interact: extending protein language models to predict protein-protein interactions.
  ☆52Updated 3 months ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆41Updated 2 years ago
• Doudna-lab / GARNET_DL
  ☆36Updated 11 months ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• abelavit / PepCNN
  ☆22Updated last year
• baranwa2 / MetabolicPathwayPrediction
  ☆36Updated 2 years ago
• Superzchen / iFeatureOmega-CLI
  iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…
  ☆32Updated 2 years ago
• xinformatics / alphafold
  Open source code for AlphaFold to extract protein embeddings
  ☆27Updated 4 years ago
• Bitbol-Lab / Phylogeny-MSA-Transformer
  Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…
  ☆17Updated 11 months ago
• aedera / anc2vec
  Unsupervised neural network for learning embeddings of GO terms.
  ☆20Updated 3 years ago
• alchemab / parapred-pytorch
  PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)
  ☆20Updated 2 years ago
• pth1993 / DeepCE
  A deep learning framework for high-throughput mechanism-driven phenotype screening
  ☆52Updated 4 years ago
• GIST-CSBL / HoTS
  HoTS: Sequence-based prediction of binding regions and drug-target interactions.
  ☆28Updated 3 years ago
• cognano / AVIDa-SARS-CoV-2
  Code for NeurIPS 2024 paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"
  ☆14Updated last year
• BioColLab / PFresGO
  ☆21Updated last year
• brianhie / uncertainty
  Learning with uncertainty for biological discovery and design
  ☆34Updated 2 years ago
• murphy17 / graff-ms
  Efficiently predicting high resolution mass spectra with graph neural networks
  ☆31Updated 2 years ago
• GGchen1997 / STEPS_Bioinformatics
  ☆16Updated 2 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆60Updated 4 years ago
• samgoldman97 / Codon-Optimization
  A neural based approach to the task of genetic codon optimization
  ☆18Updated 5 years ago
• Wang-lab-UCSD / RESP
  The code used to generate the results from Parkinson / Hard et al. 2022
  ☆17Updated 5 months ago
• MarkusWenzel / xai-proteins
  Insights into the inner workings of transformer models for protein function prediction
  ☆14Updated last year
• TeamSundar / TransDTI
  TransDTI: Transformer-based language models for estimating DTIs and building a drug-recommendation workflow
  ☆13Updated 3 years ago
• amyxlu / CPCProt
  Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.
  ☆30Updated 4 months ago