autosome-ru / vigg_ribonanza
Source code of the Stanford Ribonanza RNA Folding first place solution
☆21Updated 11 months ago
Related projects ⓘ
Alternatives and complementary repositories for vigg_ribonanza
- Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion☆37Updated 3 months ago
- Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.☆98Updated last week
- ☆57Updated 8 months ago
- Implementation of ProteinBERT in Pytorch☆153Updated 3 years ago
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆50Updated 8 months ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆43Updated 3 months ago
- ☆19Updated 4 months ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2024☆43Updated 4 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. https…☆82Updated last month
- Protein structure datasets for machine learning.☆102Updated 4 months ago
- MSA Transformer reproduction code☆70Updated 3 years ago
- A Python Tool for Benchmarking Ontological Classification Methods☆36Updated 6 months ago
- Official Implemetation of DPLM (ICML'24) - Diffusion Language Models Are Versatile Protein Learners☆76Updated this week
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆158Updated last year
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆203Updated 7 months ago
- Library of models for Protein Function prediction☆19Updated last week
- ☆126Updated 2 years ago
- ☆13Updated last year
- MULAN: Multimodal Protein Language Model for Sequence and Structure Encoding☆12Updated last month
- Generative Language Modeling for Antibody Design☆130Updated last month
- ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…☆109Updated 11 months ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆139Updated last year
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆86Updated 2 years ago
- A geometry-complete diffusion generative model (GCDM) for 3D molecule generation and optimization (Nature CommsChem)☆181Updated 2 months ago
- Ankh: Optimized Protein Language Model☆214Updated 10 months ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆281Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆94Updated last month
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆109Updated 7 months ago
- A list of manuscripts/tools using diffusion on biological enttieis☆96Updated last year