autosome-ru / vigg_ribonanzaLinks
Source code of the Stanford Ribonanza RNA Folding first place solution
☆38Updated last year
Alternatives and similar repositories for vigg_ribonanza
Users that are interested in vigg_ribonanza are comparing it to the libraries listed below
Sorting:
- ☆33Updated 3 months ago
- gRNAde: Geometric Deep Learning for 3D RNA inverse design (ICLR 2025 Spotlight)☆208Updated 4 months ago
- Protein structure datasets for machine learning.☆111Updated 2 months ago
- ☆58Updated last year
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆64Updated 11 months ago
- ALL Molecular ML papers from ICLR'25.☆38Updated 4 months ago
- Ankh: Optimized Protein Language Model☆228Updated last month
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆246Updated 2 months ago
- In-silico design pipeline for evaluating protein structure diffusion models.☆27Updated last year
- MULAN: Multimodal Protein Language Model for Sequence and Structure Encoding☆18Updated last month
- Official implementation of DrugGEN: Target Specific De Novo Design of Drug Candidate Molecules with Graph Transformer-based Generative Ad…☆67Updated 3 months ago
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆58Updated last year
- A list of manuscripts/tools using diffusion on biological enttieis☆97Updated last year
- ☆21Updated last year
- A geometry-complete diffusion generative model (GCDM) for 3D molecule generation and optimization. (Nature CommsChem)☆210Updated last month
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆167Updated last month
- ☆44Updated last year
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆160Updated 2 years ago
- Protein language model customized for antibodies☆140Updated 3 months ago
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆66Updated 3 weeks ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆129Updated 3 months ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆99Updated 11 months ago
- ☆74Updated last month
- Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge☆43Updated 9 months ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆75Updated last year
- Deep learning datasets for RNA 3D and 2.5D structures.☆40Updated last week
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- ☆44Updated 3 weeks ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆55Updated last year
- LoRA for protein language models☆40Updated last year