asrhou / NATMI
NATMI: Network Analysis Toolkit for the Multicellular Interactions
☆15Updated 3 years ago
Related projects: ⓘ
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆33Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆26Updated 4 years ago
- ☆38Updated last month
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆26Updated 4 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆27Updated 3 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated last year
- Predicting transcription factor binding in single cells through deep learning☆13Updated last year
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆30Updated 6 months ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆23Updated 2 years ago
- Information-based dimensionality reduction☆29Updated last month
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 6 months ago
- Multi-study integration of cellular trajectories☆18Updated 4 years ago
- Fast motif matching in R☆41Updated 7 months ago
- Dynamic models for single-cell RNA-seq time series.☆39Updated 5 years ago
- scNMT-seq gastrulation☆41Updated last year
- Gene Set + S2G strategy annotations analyzed for disease architecture☆46Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆36Updated 2 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 8 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆19Updated 5 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆27Updated 3 months ago
- ZornLab / Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineageCode and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆9Updated 4 years ago
- ☆19Updated 3 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆17Updated last year
- Regulatory networks with Direct Information in python☆38Updated last year
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆10Updated last week
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆20Updated 2 years ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆21Updated 2 years ago
- ☆34Updated 4 months ago
- BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequenc…☆29Updated last year