NATMI: Network Analysis Toolkit for the Multicellular Interactions
☆19Dec 19, 2024Updated last year
Alternatives and similar repositories for NATMI
Users that are interested in NATMI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆25Aug 5, 2025Updated 11 months ago
- A computational method for inferring cell-cell communication signaling networks using single-cell transcriptomics data.☆21Dec 29, 2025Updated 6 months ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆30Mar 2, 2020Updated 6 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆36Apr 13, 2021Updated 5 years ago
- DistMap☆15Nov 23, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆88Oct 6, 2023Updated 2 years ago
- Metacell - Single-cell mRNA Analysis☆121Jul 15, 2026Updated last week
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆11Nov 20, 2024Updated last year
- Reinforcement learning for clustering in Ginkgo☆14Mar 29, 2021Updated 5 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Mar 15, 2023Updated 3 years ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆154Jan 20, 2023Updated 3 years ago
- A simple tool to monitor a process group and record its CPU, MEM and time cost.☆19Mar 21, 2023Updated 3 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- ☆47Jul 24, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A record of the analysis pipelines used to create the HTAPP data☆34Apr 15, 2025Updated last year
- ☆25Apr 29, 2018Updated 8 years ago
- ☆12Dec 7, 2019Updated 6 years ago
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Feb 17, 2021Updated 5 years ago
- SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …☆22Dec 12, 2020Updated 5 years ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆55Jun 15, 2021Updated 5 years ago
- R script for the covid balf data analysis☆66Aug 12, 2020Updated 5 years ago
- A toolkit to bulk-submission, download, analysis and summarizing data from abYsis.org☆10Apr 20, 2020Updated 6 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆31Feb 17, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 3 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Jul 2, 2026Updated 3 weeks ago
- ☆68Aug 2, 2019Updated 6 years ago
- An experimental modular OS written in Rust.☆12Jul 19, 2024Updated 2 years ago
- Symbol Representing Hardware And Software Processing Of Sensor Input☆16Aug 2, 2016Updated 9 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 9 years ago
- ☆25Jan 18, 2022Updated 4 years ago
- 在R语言中使用ChatGPT（中国大陆版）☆12Mar 17, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Course on designing high-throughput experiments☆13Sep 25, 2024Updated last year
- Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.☆34Mar 24, 2023Updated 3 years ago
- A highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learn…☆12May 19, 2021Updated 5 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- Mutational Signature Comprehensive Analysis Toolkit☆16Apr 11, 2026Updated 3 months ago
- a simply crawler framework☆12Jun 5, 2023Updated 3 years ago
- The ChIP-Seq peak calling algorithm using convolution neural networks☆15Jan 18, 2021Updated 5 years ago