RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.
☆106May 23, 2025Updated last year
Alternatives and similar repositories for SPOT-RNA
Users that are interested in SPOT-RNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-sequence and Profile-based Prediction of RNA Solvent Accessibility Using Dilated Convolution Neural Network☆13Jun 22, 2022Updated 4 years ago
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆37Apr 3, 2021Updated 5 years ago
- Sum-Product Networks (SPNs) for Robust Automatic Speaker Identification.☆11Aug 30, 2020Updated 5 years ago
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆123Apr 7, 2024Updated 2 years ago
- ☆79Apr 22, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆161Mar 22, 2026Updated 4 months ago
- CNN model based on Google Inception model to predict regression values of regression values of Tetrahymena pyriformis IGC50 from 2D imag…☆20Nov 14, 2018Updated 7 years ago
- The new source code of the LinearFold, linear-time prediction for RNA secondary structures☆197Apr 4, 2024Updated 2 years ago
- GCNfold: A novel lightweight model with valid extractors for RNA secondary structure prediction☆13Jul 23, 2023Updated 3 years ago
- to assess structural quality of RNA using 3D CNN☆15Aug 17, 2018Updated 7 years ago
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- Deep Residual-Dense Lattice Network for Speech Enhancement☆25Nov 14, 2019Updated 6 years ago
- RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io☆14Nov 3, 2022Updated 3 years ago
- Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities☆36May 24, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Secondary structure prediction of long non-coding RNA: review and experimental comparison of existing approaches, L.A. Bugnon, A.A. Edera…☆21Mar 17, 2024Updated 2 years ago
- Materials for "RNA secondary structure prediction with Convolutional Neural Networks" published in BMC Bioinformatics.☆14May 3, 2023Updated 3 years ago
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆13Jan 2, 2025Updated last year
- The ViennaRNA Package☆420Feb 24, 2026Updated 5 months ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆52Nov 23, 2023Updated 2 years ago
- Nature Methods: RNA foundation model (together with RhoFold)☆386May 27, 2025Updated last year
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆21Apr 5, 2024Updated 2 years ago
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆27Dec 3, 2024Updated last year
- ☆15Apr 9, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12Feb 13, 2019Updated 7 years ago
- Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energ…☆20Apr 3, 2021Updated 5 years ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆185Apr 8, 2026Updated 3 months ago
- Create force-directed graphs of RNA secondary structures.☆113Jun 6, 2020Updated 6 years ago
- Time-Scale Modification For MATLAB