jaswindersingh2 / SPOT-RNALinks
RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.
☆107Updated 7 months ago
Alternatives and similar repositories for SPOT-RNA
Users that are interested in SPOT-RNA are comparing it to the libraries listed below
Sorting:
- Evolutionary velocity with protein language models☆94Updated 3 weeks ago
- Neural Networks for Protein Sequence Alignment☆134Updated last year
- ☆77Updated 8 months ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆154Updated last week
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆50Updated 2 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆106Updated last week
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- Protein sequence classification with self-supervised pretraining☆82Updated 4 years ago
- ☆108Updated 2 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Install alphafold on the local machine, get out of docker.☆103Updated 4 years ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆167Updated 8 months ago
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆34Updated 4 years ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆121Updated last year
- Protein language model trained on coding DNA☆52Updated last year
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆41Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of auto…☆121Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆84Updated last year
- A generative latent variable model for biological sequence families.☆244Updated 3 years ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆42Updated last year
- Multi-task and masked language model-based protein sequence embedding models.☆104Updated 4 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆121Updated 4 years ago
- A software package for computing features of peptides and proteins☆65Updated last year
- ☆74Updated last year
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆108Updated 3 months ago
- RNA Multiple Sequence Alignment☆47Updated 2 years ago
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆86Updated last year
- ☆59Updated 3 years ago
- ☆85Updated 2 years ago