Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.
☆111Nov 20, 2025Updated 8 months ago
Alternatives and similar repositories for arnie
Users that are interested in arnie are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆24Sep 7, 2023Updated 2 years ago
- Draw RNA secondary structures in python.☆54Jun 24, 2025Updated last year
- Arnie-based DegScore tool.☆27Sep 30, 2022Updated 3 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆71Jun 16, 2026Updated last month
- ☆23Jul 14, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆52Nov 23, 2023Updated 2 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Nov 11, 2022Updated 3 years ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆185Apr 8, 2026Updated 4 months ago
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆18Jun 10, 2022Updated 4 years ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆83Aug 11, 2024Updated last year
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆20Jul 11, 2024Updated 2 years ago
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆56Nov 17, 2024Updated last year
- ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures☆15May 20, 2022Updated 4 years ago
- Resources for the BioML Challenge 2024: Bits to Binders☆20Aug 24, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆68May 8, 2026Updated 3 months ago
- ☆15Apr 7, 2022Updated 4 years ago
- Transformer + GAT for RNA chemical reactivity prediction| Stanford Ribonanza☆11Jan 28, 2026Updated 6 months ago
- ☆24Jul 21, 2023Updated 3 years ago
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆242May 29, 2025Updated last year
- Source code of the Stanford Ribonanza RNA Folding first place solution☆42Dec 21, 2023Updated 2 years ago
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- RiboNucleic Acid (RNA) Language Model☆171May 4, 2026Updated 3 months ago
- RNA Multiple Sequence Alignment☆53Jul 20, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.☆18May 6, 2025Updated last year
- TMol☆84Updated this week
- ☆21Jul 16, 2024Updated 2 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated 2 years ago
- Codon optimizer for tissue-specific expression☆17Sep 26, 2024Updated last year
- ☆96Jan 25, 2024Updated 2 years ago
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16Jul 31, 2026Updated last week
- ☆25Dec 20, 2022Updated 3 years ago
- RNA secondary structure prediction tool☆20Jul 31, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Visualization, comparison, and analysis of RNA secondary structures via a cross-platform GUI☆18May 19, 2025Updated last year
- Nature Methods: RNA foundation model (together with RhoFold)☆387May 27, 2025Updated last year
- Rapid mining of RNA structure motifs from profiling data.☆14Oct 20, 2021Updated 4 years ago
- A platform to do RNA science☆28Mar 7, 2021Updated 5 years ago
- ☆16Mar 19, 2026Updated 4 months ago
- ☆16Apr 9, 2026Updated 4 months ago
- An ensemble-based approach for prediction of protein S-nitrosylation sites integrating supervised word embedding and embedding from prote…☆12May 8, 2024Updated 2 years ago