welch-lab / SquiggleNet
☆20Updated 2 years ago
Alternatives and similar repositories for SquiggleNet:
Users that are interested in SquiggleNet are comparing it to the libraries listed below
- Nanopore direct RNA basecaller☆11Updated 2 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 3 years ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated 9 months ago
- ☆9Updated 3 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 7 months ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆13Updated 3 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated 9 months ago
- crab go snap snap☆37Updated 2 weeks ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆15Updated 2 weeks ago
- Simple library/pipeline to generate and handle Hi-C data.☆37Updated 3 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Updated 2 years ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Updated 4 years ago
- Xron - an omni basecaller for ONT reads.☆20Updated 2 months ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 6 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆44Updated 4 months ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Updated last year
- ☆44Updated last month
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆9Updated 3 years ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆46Updated last month
- Tumour-only somatic mutation calling using long reads☆26Updated 3 months ago
- ☆28Updated last year
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Updated 3 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- ☆29Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆21Updated last week