welch-lab / SquiggleNetLinks
☆22Updated 2 months ago
Alternatives and similar repositories for SquiggleNet
Users that are interested in SquiggleNet are comparing it to the libraries listed below
Sorting:
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- Realtime base modification frequency tool☆13Updated 3 months ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆44Updated 4 months ago
- Nanopore direct RNA basecaller☆11Updated 3 years ago
- A genome browser in your Jupyter notebook☆31Updated 7 months ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated last year
- Super-fast and accurate demultiplexing of direct RNA-seq runs.☆18Updated 5 months ago
- A streaming method for mapping nanopore raw signals☆32Updated 4 years ago
- Python bindings for the TaxonKit library☆41Updated 3 weeks ago
- ☆30Updated last year
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆58Updated 10 months ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- a tool for simulating nanopore raw signal data☆71Updated 3 months ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆36Updated last week
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated last month
- An insertion caller for Illumina paired-end WGS data.☆23Updated 4 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 10 months ago
- ☆33Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Updated 3 months ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- ☆38Updated last year
- ☆29Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Scoring GT/AG sites for improving spliced alignment☆48Updated last month
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Updated 5 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago