dhesin / RNABERT-2View external linksLinks
☆13Dec 6, 2022Updated 3 years ago
Alternatives and similar repositories for RNABERT-2
Users that are interested in RNABERT-2 are comparing it to the libraries listed below
Sorting:
- to assess structural quality of RNA using 3D CNN☆13Aug 17, 2018Updated 7 years ago
- Contrastive learning and pre-trained encoder (CLAPE) for protein-small molecules binding (SMB) sites prediction☆19Aug 22, 2024Updated last year
- Source code of the Stanford Ribonanza RNA Folding first place solution☆41Dec 21, 2023Updated 2 years ago
- a deep learning architecture for RNA-ligand binding sites prediction☆18Jan 21, 2024Updated 2 years ago
- Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energ…☆18Apr 3, 2021Updated 4 years ago
- Fourth place solution to the "OpenVaccine: COVID-19 mRNA Vaccine Degradation Prediction" organized by Stanford University and Kaggle☆21Oct 16, 2020Updated 5 years ago
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆68Jul 22, 2024Updated last year
- Pipeline to calculate icSHAPE score in genome with sliding window strategy☆12Aug 23, 2022Updated 3 years ago
- Repository of IPBench☆19Jan 4, 2026Updated last month
- Nature Methods: RNA foundation model (together with RhoFold)☆349May 27, 2025Updated 8 months ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated 5 months ago
- ☆11Jul 17, 2023Updated 2 years ago
- GBM implementation on Legate☆14Jan 28, 2026Updated 2 weeks ago
- Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences☆10Feb 26, 2023Updated 2 years ago
- ☆38Dec 15, 2023Updated 2 years ago
- Primary RNA sequence model☆42May 20, 2024Updated last year
- JAX Scalify: end-to-end scaled arithmetics☆18Oct 30, 2024Updated last year
- Code the ICML 2024 paper: "Variance-reduced Zeroth-Order Methods for Fine-Tuning Language Models"☆11Jun 25, 2024Updated last year
- The repo for paper: Exploiting the Index Gradients for Optimization-Based Jailbreaking on Large Language Models.☆13Dec 16, 2024Updated last year
- d3heatmap is a Python package to create interactive heatmaps based on d3js.☆10Sep 14, 2023Updated 2 years ago
- source for paper DGNN-DDI☆11Oct 8, 2023Updated 2 years ago
- GisPy: A Tool for Measuring Gist Inference Score in Text https://aclanthology.org/2022.wnu-1.5/☆13Jul 1, 2024Updated last year
- Mixture of Expert (MoE) techniques for enhancing LLM performance through expert-driven prompt mapping and adapter combinations.☆12Feb 11, 2024Updated 2 years ago
- [NeurIPS 2023] Implementation of "Improving Self-supervised Molecular Representation Learning using Persistent Homology"☆12Nov 16, 2023Updated 2 years ago
- ☆15Jul 26, 2022Updated 3 years ago
- ☆12Nov 16, 2023Updated 2 years ago
- An LLM inference engine, written in C++☆18Feb 5, 2026Updated last week
- ☆12May 23, 2024Updated last year
- A deep learning framework for deubiquitnase-substrate interaction identification☆11Jul 31, 2025Updated 6 months ago
- 🎉 TrustJudge is accepted to ICLR 2026!☆38Sep 27, 2025Updated 4 months ago
- Generating Summaries with Controllable Readability Levels (EMNLP 2023)☆14Aug 6, 2025Updated 6 months ago
- Transformer + GAT for RNA chemical reactivity prediction| Stanford Ribonanza☆11Jan 28, 2026Updated 2 weeks ago
- Code for the paper "FinRLlama: A Solution to LLM-Engineered Signals Challenge at FinRL Contest 2024"☆13Feb 14, 2025Updated 11 months ago
- ☆15Jan 12, 2026Updated last month
- CodeQUEST is a generalizable framework which leverages LLMs to iteratively evaluate and enhance code quality across multiple dimensions f…☆16Dec 23, 2025Updated last month
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Feb 6, 2025Updated last year
- Faster version of AugShuffleNet without channel shuffle, computes partially, crossovers swiftly☆11Feb 17, 2025Updated 11 months ago
- ☆13Mar 2, 2025Updated 11 months ago
- Fast search index for SPLADE sparse retrieval models implemented in Python using Numpy and Numba☆34Oct 16, 2025Updated 3 months ago