automl / ProbTransformerLinks
Probabilistic Transformer: Modelling Ambiguities and Distributions for RNA Folding and Molecule Design
☆18Updated 11 months ago
Alternatives and similar repositories for ProbTransformer
Users that are interested in ProbTransformer are comparing it to the libraries listed below
Sorting:
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Updated 9 months ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 2 years ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆113Updated 3 years ago
- ☆35Updated 2 months ago
- Code for "Biological Sequence Design with GFlowNets", 2022☆73Updated 2 years ago
- A Modular Architecture for Deep Learning Systems☆43Updated last month
- Code for 'On Pre-trained Language Models For Antibody'☆33Updated 2 years ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆82Updated 3 years ago
- Code for our paper "Unlocking Guidance for Discrete State-Space Diffusion and Flow Models"☆22Updated 3 months ago
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆92Updated 2 years ago
- Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pyt…☆74Updated 4 years ago
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆114Updated last year
- Code for the paper LaM-SLidE - Latent Space Modeling of Spatial Dynamical Systems via Linked Entities☆25Updated last month
- Implementation of Denoising Diffusion for protein design, but using the new Equiformer (successor to SE3 Transformers) with some addition…☆57Updated 2 years ago
- Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorc…☆163Updated 2 years ago
- Source code for ICLR 2021 paper: "Molecule Optimization by Explainable Evolution"☆30Updated 4 years ago
- Dirichlet Diffusion Score Model for Biological Sequence Generation.☆55Updated 5 months ago
- Research repo for AI aided drug discovery, de novo drug development and related topics☆36Updated 3 years ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆55Updated last year
- Official implementation for the paper "EBMDOCK: NEURAL PROBABILISTIC PROTEIN-PROTEIN DOCKING VIA A DIFFERENTIABLE ENERGY-BASED MODEL" (IC…☆13Updated last year
- ☆44Updated 3 weeks ago
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆36Updated last year
- Code for "Molecular Hypergraph Grammar with Its Application to Molecular Optimization"☆39Updated 7 months ago
- ☆18Updated last year
- [ICLR 2023] "HotProtein: A Novel Framework for Protein Thermostability Prediction and Editing" by Tianlong Chen*, Chengyue Gong*, Daniel …☆31Updated 2 years ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆97Updated 2 years ago
- Retrieved Sequence Augmentation for Protein Representation Learning☆53Updated last year
- Benchmark for Biophysical Sequence Optimization Algorithms☆18Updated last month
- Implementation of ProteinBERT in Pytorch☆161Updated 3 years ago
- Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1☆37Updated 3 years ago