Probabilistic Transformer: Modelling Ambiguities and Distributions for RNA Folding and Molecule Design
☆18Aug 7, 2024Updated last year
Alternatives and similar repositories for ProbTransformer
Users that are interested in ProbTransformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Apr 16, 2024Updated 2 years ago
- rnalib: a python-based transcriptomics library☆13Jan 23, 2026Updated 6 months ago
- Contains CHARMING.py and its associated README.md☆13Oct 20, 2022Updated 3 years ago
- Dynamic mode decomposition in Python☆13Jun 9, 2015Updated 11 years ago
- StructureFold2☆12Jun 25, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆56Oct 2, 2023Updated 2 years ago
- Fast and exact ILP-based solvers for the Minimum Flow Decomposition problem, and variants of it.☆14Dec 4, 2025Updated 7 months ago
- A deep learning method for the prediction of internal ribosome entry sites (IRES) of circRNAs☆17Jul 6, 2025Updated last year
- add a Arg: label_smoothing for torch.nn.CrossEntropyLoss()☆14Jan 13, 2021Updated 5 years ago
- 整合型的对于生物学注释的信息/GO和KEGG全谱注释和富集☆14Nov 8, 2017Updated 8 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated last year
- A package containing neural network architectures based on Variational Autoencoders (VAE) and Restricted Boltzmann Machines (RBM) for lea…☆12Dec 23, 2021Updated 4 years ago
- ☆17Updated this week
- RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.☆18May 6, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SSR: A Unifed Framework for Prediction in Secondary Structure of RNA. 整合了LinearFold, E2Efold, MXfold2算法,包含数据集,欢迎一键使用。☆10Dec 31, 2021Updated 4 years ago
- Label smoothed Aggregation cross entropy loss for generalisation in sequence to sequence tasks.☆14Dec 17, 2019Updated 6 years ago
- Pytorch implementation of Detective☆13Jul 11, 2024Updated 2 years ago
- Single-Source Domain Generalization for Bearing Fault Diagnosis Using Feature-Augmented Adaptive Neuro-Fuzzy Inference System☆12Apr 13, 2024Updated 2 years ago
- [NeurIPS 2024] Official Implementation of "SDformer: Similarity-driven Discrete Transformer For Time Series Generation"☆16May 23, 2025Updated last year
- ☆11Apr 2, 2021Updated 5 years ago
- ☆12Jul 6, 2023Updated 3 years ago
- CLIP Tool Kit (CTK)☆22Apr 28, 2024Updated 2 years ago
- Implementation for the paper MoCL: Contrastive Learning on Molecular Graph with multi-level Domain Knowledge☆41Sep 7, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12Oct 10, 2021Updated 4 years ago
- bioinformatics visualization tools with pyviz/bokeh☆20Sep 30, 2023Updated 2 years ago
- Official source code for Time is Not Enough: Time-Frequency based Explanation for Time-Series Black-Box Models☆13Dec 5, 2024Updated last year
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆25Jul 1, 2026Updated 3 weeks ago
- ☆21Jul 16, 2024Updated 2 years ago
- [NAACL 2024] CoE-SQL: In-Context Learning for Multi-Turn Text-to-SQL with Chain-of-Editions☆13May 7, 2024Updated 2 years ago
- This is an updated version of the MolecularTransformer of Schwaller et. al.☆14Jan 17, 2022Updated 4 years ago
- [ICLR'25] "Understanding Bottlenecks of State Space Models through the Lens of Recency and Over-smoothing" by Peihao Wang, Ruisi Cai, Yue…☆18Mar 21, 2025Updated last year
- RNAPro is a state-of-the-art RNA 3D folding model developed in collaboration with the hosts and winners of the Stanford RNA 3D Folding Ka…☆91Jun 5, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Repositorio de la unidad 2 del curso INFO274: Simulación, Instituto de Informática, UACh☆10Dec 18, 2022Updated 3 years ago
- Applies ROME and MEMIT on Mamba-S4 models☆16Apr 5, 2024Updated 2 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆23Apr 16, 2019Updated 7 years ago
- ☆23Jul 21, 2023Updated 3 years ago
- ☆11Feb 18, 2021Updated 5 years ago
- ☆14Jul 24, 2023Updated 3 years ago
- ☆14Apr 14, 2026Updated 3 months ago