Probabilistic Transformer: Modelling Ambiguities and Distributions for RNA Folding and Molecule Design
☆18Aug 7, 2024Updated 2 years ago
Alternatives and similar repositories for ProbTransformer
Users that are interested in ProbTransformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Apr 16, 2024Updated 2 years ago
- rnalib: a python-based transcriptomics library☆14Jul 27, 2026Updated 2 weeks ago
- bioinfo workflow based on snakemake☆15Feb 22, 2024Updated 2 years ago
- https://relab.xidian.edu.cn/AgeAnno/#/☆15Oct 22, 2022Updated 3 years ago
- A unified and modular interface to homology modelling software☆12Sep 27, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆56Oct 2, 2023Updated 2 years ago
- This repository contains the codes and data to replicate the experimental results in the manuscript Heterogeneous Graph Tree Networks.☆12Nov 23, 2022Updated 3 years ago
- Fast and exact ILP-based solvers for the Minimum Flow Decomposition problem, and variants of it.☆14Dec 4, 2025Updated 8 months ago
- A deep learning method for the prediction of internal ribosome entry sites (IRES) of circRNAs☆17Jul 6, 2025Updated last year
- Tree-Invent: A novel molecular generative model constrained with topological tree☆14Jul 26, 2023Updated 3 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated last year
- A package containing neural network architectures based on Variational Autoencoders (VAE) and Restricted Boltzmann Machines (RBM) for lea…☆12Dec 23, 2021Updated 4 years ago
- ☆17Updated this week
- Library for KEGG pathway enrichment analysis☆19Jul 12, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Convolutional Variational Autoencoder☆10Sep 7, 2018Updated 7 years ago
- RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.☆18May 6, 2025Updated last year
- SSR: A Unifed Framework for Prediction in Secondary Structure of RNA. 整合了LinearFold, E2Efold, MXfold2算法,包含数据集,欢迎一键使用。☆10Dec 31, 2021Updated 4 years ago
- Heuristic Reinforcement Learning☆11Aug 9, 2018Updated 8 years ago
- Code for "Molecule Edit Graph Attention Network: Modeling Chemical Reactions as Sequences of Graph Edits"☆65Mar 7, 2023Updated 3 years ago
- Pytorch implementation of Detective☆14Jul 11, 2024Updated 2 years ago
- Transformer for text summarization implemented in pytorch☆11Aug 17, 2019Updated 6 years ago
- [NeurIPS 2024] Official Implementation of "SDformer: Similarity-driven Discrete Transformer For Time Series Generation"☆17May 23, 2025Updated last year
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆15Jul 2, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- CLIP Tool Kit (CTK)☆22Apr 28, 2024Updated 2 years ago
- Implementation for the paper MoCL: Contrastive Learning on Molecular Graph with multi-level Domain Knowledge☆41Sep 7, 2023Updated 2 years ago
- Rapid mining of RNA structure motifs from profiling data.☆14Oct 20, 2021Updated 4 years ago
- ☆12Nov 25, 2018Updated 7 years ago
- Analyse RNA feature distributions.☆21Dec 16, 2024Updated last year
- ☆13May 13, 2024Updated 2 years ago
- ☆12Jul 31, 2026Updated last week
- bioinformatics visualization tools with pyviz/bokeh☆20Sep 30, 2023Updated 2 years ago
- RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io☆14Nov 3, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆25Aug 6, 2026Updated last week
- This project aims to foster the usage of Transformers as generative models to sample artificial multivariate time series. Thereby, the la…☆16Feb 20, 2025Updated last year
- ☆21Jul 16, 2024Updated 2 years ago
- [NAACL 2024] CoE-SQL: In-Context Learning for Multi-Turn Text-to-SQL with Chain-of-Editions☆13May 7, 2024Updated 2 years ago
- Semi-Markov Afterstate Actor-Critic (SMAAC) with Maze☆11Nov 16, 2021Updated 4 years ago
- This is an updated version of the MolecularTransformer of Schwaller et. al.☆14Jan 17, 2022Updated 4 years ago
- [ICLR'25] "Understanding Bottlenecks of State Space Models through the Lens of Recency and Over-smoothing" by Peihao Wang, Ruisi Cai, Yue…☆18Mar 21, 2025Updated last year