EnbinYang / GCNfoldLinks
GCNfold: A novel lightweight model with valid extractors for RNA secondary structure prediction
☆14Updated 2 years ago
Alternatives and similar repositories for GCNfold
Users that are interested in GCNfold are comparing it to the libraries listed below
Sorting:
- RNA Multiple Sequence Alignment☆47Updated 2 years ago
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆67Updated last year
- ☆90Updated last month
- RiboNucleic Acid (RNA) Language Model☆154Updated 4 months ago
- ☆109Updated 2 years ago
- ☆78Updated 9 months ago
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆36Updated 7 months ago
- Geometric deep learning of protein–DNA binding specificity☆76Updated 10 months ago
- ☆58Updated last year
- ☆77Updated last year
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆61Updated last year
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆62Updated 3 weeks ago
- ☆18Updated last year
- Protein language model trained on coding DNA☆53Updated last year
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆46Updated last year
- Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…☆183Updated 2 years ago
- ☆76Updated last year
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆91Updated last year
- ☆122Updated last year
- Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model☆35Updated 2 months ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆108Updated last month
- ☆36Updated last year
- A generalized enzyme kinetics parameter prediction model.☆73Updated 4 months ago
- ☆91Updated 3 years ago
- ☆38Updated 3 years ago
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆86Updated last year
- MSA Transformer reproduction code☆91Updated 4 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆105Updated 4 years ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆70Updated 5 months ago
- DeepAAI☆35Updated last year