Ruheng-W / PepBCL
We propose PepBCL, a novel BERT (Bidirectional Encoder Representation from Transformers)-based Contrastive Learning framework to predict the protein-Peptide binding residues based on protein sequences only.
☆14Updated last year
Related projects ⓘ
Alternatives and complementary repositories for PepBCL
- ☆18Updated last year
- ☆21Updated last year
- ☆26Updated 10 months ago
- An accurate and efficient protein sequence design approach☆20Updated 11 months ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆25Updated 2 years ago
- ☆31Updated last year
- ☆13Updated 3 months ago
- a deep learning architecture for RNA-ligand binding sites prediction☆16Updated 9 months ago
- ☆20Updated last year
- ☆18Updated last year
- ☆15Updated 3 months ago
- ☆20Updated 4 months ago
- ☆31Updated 7 months ago
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆30Updated 6 months ago
- LMetalSite: alignment-free metal ion-binding site prediction from protein sequence through pretrained language model and multi-task learn…☆18Updated 3 months ago
- The standalone version / cli-tool of SPOT-Contact-Single available for public use for research purposes.☆15Updated 9 months ago
- The standalone version of SPOT-1D-Single available for public use for research purposes.☆23Updated 5 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆25Updated 5 months ago
- Structure-Informed Protein Language Model☆26Updated 8 months ago
- Generates consistent PSSM and/or PDB files for protein-protein complexes☆18Updated 2 years ago
- Transformer Based Language Model for Peptide Property Prediction☆34Updated 3 months ago
- A Python 3 version of the protein descriptor package propy☆38Updated last year
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆56Updated 3 months ago
- RNA Multiple Sequence Alignment☆24Updated last year
- Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2024…☆47Updated 2 weeks ago
- Computationally Restoring the Potency of a Clinical Antibody☆16Updated 8 months ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆51Updated 2 years ago
- Repo contains source code of the SurfaceID paper☆15Updated 8 months ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆33Updated last year
- ☆10Updated 6 months ago