We propose PepBCL, a novel BERT (Bidirectional Encoder Representation from Transformers)-based Contrastive Learning framework to predict the protein-Peptide binding residues based on protein sequences only.
☆19Mar 29, 2023Updated 3 years ago
Alternatives and similar repositories for PepBCL
Users that are interested in PepBCL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆36Jan 14, 2025Updated last year
- ☆10Mar 8, 2024Updated 2 years ago
- 一个可以悄悄窃取他人 U 盘中 ppt 的脚本。(不发 ppt 却考 ppt 内容的老师是最可恶的老师)☆15Jan 10, 2021Updated 5 years ago
- Sequence-based protein solubility prediction using multidimensional embedding☆13Apr 19, 2021Updated 5 years ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆20Jan 15, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 10 months ago
- SE(3) diffusion models for generating CDR loops☆10Feb 6, 2024Updated 2 years ago
- ☆11Jan 2, 2021Updated 5 years ago
- mirror of https://zhanglab.ccmb.med.umich.edu/EDTSurf/☆10Jun 20, 2023Updated 3 years ago
- ☆17Mar 26, 2024Updated 2 years ago
- ☆15Jan 16, 2024Updated 2 years ago
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆21Apr 5, 2024Updated 2 years ago
- ☆21Jun 19, 2026Updated 3 months ago
- ML-based molecular representation models using PyTorch☆16Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- TISIGNER: Unleash the power of synthetic biology☆26Aug 19, 2026Updated last month
- ☆18Dec 22, 2017Updated 8 years ago
- [Nat. Commun.] Code for paper 'Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely …☆33Oct 23, 2021Updated 4 years ago
- ☆19Jan 17, 2025Updated last year
- Two-way Multi-Label Loss☆36May 12, 2023Updated 3 years ago
- 该仓库主要记录 NLP 算法工程师相关的顶会论文研读笔记【信息抽取篇】☆31Jan 27, 2023Updated 3 years ago
- ☆22Jun 10, 2024Updated 2 years ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆18Sep 10, 2024Updated 2 years ago
- ☆41Jan 26, 2026Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Toolkit for structure-based deep learning on RNA.☆46Sep 4, 2026Updated 2 weeks ago
- Python scripts for molecular docking of molecules vs DUDE protein targets, using Vina☆25Apr 20, 2020Updated 6 years ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆19Feb 8, 2024Updated 2 years ago
- ☆13Updated this week
- iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of auto…☆129Apr 15, 2024Updated 2 years ago
- structRFM: A fully open structure-guided RNA foundation model for robust structural and functional inference☆41Aug 29, 2026Updated 3 weeks ago
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆13Jan 2, 2025Updated last year
- DeepAAI☆36Dec 25, 2024Updated last year
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆21Feb 6, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆12Jun 2, 2022Updated 4 years ago
- A repository for neural representational learning of RNA secondary structures☆33Feb 13, 2020Updated 6 years ago
- Collects software dedicated to predicting specific properties of peptides☆70Dec 17, 2024Updated last year
- ☆84Jun 29, 2025Updated last year
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- The code for our paper "Label-Specific Feature Augmentation for Long-Tailed Multi-Label Text Classification”☆13Apr 20, 2023Updated 3 years ago
- Optimized Generative Adversarial Network with Graph Convolutional Networks for Novel Molecule Design☆13Jan 2, 2024Updated 2 years ago