Ruheng-W / PepBCLLinks
We propose PepBCL, a novel BERT (Bidirectional Encoder Representation from Transformers)-based Contrastive Learning framework to predict the protein-Peptide binding residues based on protein sequences only.
☆15Updated 2 years ago
Alternatives and similar repositories for PepBCL
Users that are interested in PepBCL are comparing it to the libraries listed below
Sorting:
- ☆33Updated 2 years ago
- ☆17Updated last year
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Updated 2 years ago
- ☆25Updated 2 years ago
- Geometry-aware protein binding site predictor☆21Updated 10 months ago
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆26Updated 2 years ago
- Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models☆37Updated 6 months ago
- Protein language model trained on coding DNA☆47Updated 8 months ago
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆30Updated 5 months ago
- This repository contains scripts, data and jupyter notebooks used to produce the evaluation results in the BioPhi 2021 publication☆17Updated 2 years ago
- The standalone version / cli-tool of SPOT-Contact-Single available for public use for research purposes.☆16Updated last year
- ☆69Updated 4 years ago
- Deep transformer for predicting interchain residue-residue distances of protein complexes☆12Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆41Updated last month
- ☆25Updated last year
- Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.☆36Updated 6 months ago
- An accurate and efficient protein sequence design approach☆24Updated 3 months ago
- PocketDTA☆30Updated 8 months ago
- ☆36Updated 5 months ago
- ☆15Updated 4 months ago
- Inference code for Bio-Inspired Antibody Language Model☆25Updated 10 months ago
- Code for the antibody deep learning paper.☆15Updated 3 years ago
- ☆33Updated last year
- Alignment-free structure prediction using protein language models☆22Updated 2 years ago
- ☆17Updated 5 months ago
- ☆20Updated last month
- Scoring methods for predicting the DDG upon protein mutation☆14Updated 2 years ago
- ☆21Updated last year
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆33Updated last year
- ☆68Updated 9 months ago