rouskinlab / seismic-rnaLinks
☆11Updated last month
Alternatives and similar repositories for seismic-rna
Users that are interested in seismic-rna are comparing it to the libraries listed below
Sorting:
- ☆19Updated 10 months ago
- a Transformer-based neural network for generating highly optimized protein sequences called Regularized Latent Space Optimization (RELSO)☆89Updated 2 years ago
- Differentiable RNA folding in JAX☆22Updated 7 months ago
- RNAGym is an extensive benchmark suite and resource for RNA fitness and structure prediction☆25Updated this week
- Direct coupling analysis software for protein and RNA sequences☆53Updated 3 months ago
- ☆20Updated 4 years ago
- Generator and regressor neural networks for antimicrobial peptides☆25Updated last year
- PSIPRED Protein Secondary Structure Predictor☆58Updated 4 months ago
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Updated 5 years ago
- RNA secondary structure prediction tool☆18Updated last month
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆33Updated 4 years ago
- RNA Multiple Sequence Alignment☆46Updated 2 years ago
- ☆74Updated 6 months ago
- ☆36Updated last year
- Deciphering protein evolution and fitness landscapes with latent space models☆35Updated 4 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆59Updated 3 weeks ago
- ☆107Updated last year
- Feature map and function annotation of Proteins☆34Updated last year
- Fast and accurate prediction of coiled coil domains in protein sequences. ☆25Updated last year
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆105Updated 5 months ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆25Updated last year
- Multiple Protein Structure Alignment at Scale with FoldMason☆195Updated 3 weeks ago
- Singularity recipe for AlphaFold☆36Updated 11 months ago
- NetSurfP 3.0: Protein secondary structure and relative solvent accessibility prediction☆23Updated 2 years ago
- ☆43Updated last year
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆37Updated 2 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆61Updated 3 months ago
- ☆36Updated 9 months ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆73Updated 2 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago