☆30Nov 6, 2022Updated 3 years ago
Alternatives and similar repositories for bert-rbp
Users that are interested in bert-rbp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Mar 21, 2024Updated 2 years ago
- ☆14Jan 18, 2024Updated 2 years ago
- ☆57Oct 2, 2023Updated 3 years ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆21Jul 19, 2018Updated 8 years ago
- ☆17Jun 22, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- BioSeq-BLM: a platform for analyzing DNA, RNA and protein sequences based on biological language models☆14Aug 21, 2022Updated 4 years ago
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆70Mar 3, 2024Updated 2 years ago
- ☆13Apr 16, 2026Updated 6 months ago
- RIBOSPAN: A Long-Context RNA Foundation Model for Versatile RNA Modeling☆20Sep 1, 2026Updated 2 months ago
- Modelling RBP binding preferences to predict RPB binding sites☆11Mar 4, 2021Updated 5 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- A repository for neural representational learning of RNA secondary structures☆33Feb 13, 2020Updated 6 years ago
- icSHAPE pipeline☆32Oct 1, 2015Updated 11 years ago
- structRFM: A fully open structure-guided RNA foundation model for robust structural and functional inference☆42Aug 29, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Comprehensive benchmarking of Large Language Models for RNA secondary structure prediction," by L.I. Zablocki, L.A. Bugnon, M. Gerard, L.…☆19Apr 4, 2025Updated last year
- ☆30May 15, 2023Updated 3 years ago
- Primary RNA sequence model☆43May 20, 2024Updated 2 years ago
- A hierarchical deep learning framework for ncRNA-protein interaction prediction.☆14Nov 25, 2022Updated 3 years ago
- RNA Secondary Structure Prediction☆11Oct 26, 2023Updated 3 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 7 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Aug 10, 2021Updated 5 years ago
- a deep learning architecture for RNA-ligand binding sites prediction☆18Jan 21, 2024Updated 2 years ago
- Knowledge distillation on DNABERT (DistilBERT and MiniLM techniques) for promoter identification.☆27Nov 3, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- DeePhase predictor of homotypic liquid-liquid phase separation of proteins & the code associated with the paper "Learning the molecular g…☆20Dec 30, 2021Updated 4 years ago
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆60Oct 8, 2024Updated 2 years ago
- ☆10Mar 20, 2024Updated 2 years ago
- iCount, protein-RNA interaction analytics☆25Dec 14, 2021Updated 4 years ago
- ☆25Apr 15, 2024Updated 2 years ago
- awesome tools for RNA☆17Nov 15, 2022Updated 3 years ago
- [Nat. Commun.] Code for paper 'Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely …☆33Oct 23, 2021Updated 5 years ago
- ARES implement in PyTorch☆18Feb 27, 2024Updated 2 years ago
- ☆99Oct 9, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- inferring sequence-structure motifs using deep learning☆40Aug 3, 2023Updated 3 years ago
- An Integrated R Package for Effective Prediction of ncRNA- and lncRNA-protein Interaction☆10Nov 1, 2023Updated 3 years ago
- Aggregation and analyses of rare CNVs across diseases☆15Jan 25, 2023Updated 3 years ago
- Gencode UTR fix☆17Jan 11, 2023Updated 3 years ago
- Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆71Jul 22, 2024Updated 2 years ago
- HydraRNA is a full-length RNA language model.☆19Dec 15, 2025Updated 10 months ago
- Code for 5UTR project☆27May 20, 2023Updated 3 years ago