☆29Nov 6, 2022Updated 3 years ago
Alternatives and similar repositories for bert-rbp
Users that are interested in bert-rbp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Mar 21, 2024Updated 2 years ago
- ☆14Jan 18, 2024Updated 2 years ago
- ☆56Oct 2, 2023Updated 2 years ago
- BioSeq-BLM: a platform for analyzing DNA, RNA and protein sequences based on biological language models☆14Aug 21, 2022Updated 3 years ago
- ☆13Apr 16, 2026Updated 3 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆768Jan 22, 2026Updated 6 months ago
- A repository for neural representational learning of RNA secondary structures☆32Feb 13, 2020Updated 6 years ago
- Modelling RBP binding preferences to predict RPB binding sites☆11Mar 4, 2021Updated 5 years ago
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆69Mar 3, 2024Updated 2 years ago
- Modelling RBP binding preferences to predict RPB binding sites☆11Aug 11, 2023Updated 2 years ago
- This repository contains all DeepCLIP Python code☆11May 30, 2024Updated 2 years ago
- Nature Methods: RNA foundation model (together with RhoFold)☆386May 27, 2025Updated last year
- DeePhase predictor of homotypic liquid-liquid phase separation of proteins & the code associated with the paper "Learning the molecular g…☆20Dec 30, 2021Updated 4 years ago
- a deep learning architecture for RNA-ligand binding sites prediction☆18Jan 21, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- [Nat. Commun.] Code for paper 'Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely …☆33Oct 23, 2021Updated 4 years ago
- Parallel solution for local RNA secondary structure analysis☆12Feb 14, 2023Updated 3 years ago
- ARES implement in PyTorch☆17Feb 27, 2024Updated 2 years ago
- Structural space exploration of AlphaFold DB☆12Oct 8, 2021Updated 4 years ago
- An Interpretable Self-Attention Network with block-attention and attention-attribution.☆12Sep 22, 2023Updated 2 years ago
- Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆71Jul 22, 2024Updated 2 years ago
- ☆14Dec 2, 2024Updated last year
- ☆30May 15, 2023Updated 3 years ago
- Knowledge distillation on DNABERT (DistilBERT and MiniLM techniques) for promoter identification.☆27Nov 3, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Code for 5UTR project☆26May 20, 2023Updated 3 years ago
- Aggregation and analyses of rare CNVs across diseases☆15Jan 25, 2023Updated 3 years ago
- Pipeline to calculate icSHAPE score in genome with sliding window strategy☆13Aug 23, 2022Updated 3 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- ☆15Jun 25, 2026Updated last month
- A generative adversarial network-based model to generate synthetic RNA sequences to target proteins☆11Sep 2, 2025Updated 10 months ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆29Jun 4, 2018Updated 8 years ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆106May 23, 2025Updated last year
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆24Sep 7, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- AIDE: annotation-assisted isoform discovery and quantification from RNA-seq data☆16Aug 6, 2022Updated 3 years ago
- Species-aware DNA language modeling☆18Jan 25, 2023Updated 3 years ago
- ☆20Oct 28, 2024Updated last year
- ☆11Aug 2, 2024Updated last year
- Deep learning model to predict interactions between proteins and glycans [LEGACY; use glycowork implementation]☆14Aug 16, 2021Updated 4 years ago
- Codebase for "Clairvoyance: a Unified, End-to-End AutoML Pipeline for Medical Time Series"☆13Nov 1, 2020Updated 5 years ago
- ☆13Dec 6, 2022Updated 3 years ago