ludvigla / semlaLinks
☆98Updated 4 months ago
Alternatives and similar repositories for semla
Users that are interested in semla are comparing it to the libraries listed below
Sorting:
- From geospatial to spatial -omics☆100Updated 2 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated last month
- R package for semi-supervised single-cell data integration☆95Updated last week
- Gene regulatory network containing signed transcription factor-target gene interactions☆97Updated 8 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆138Updated 6 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆84Updated 3 years ago
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆93Updated last week
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- Pan-Cancer Single Cell Classifier☆83Updated last year
- Cell type pipes for R☆52Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Updated this week
- scGSVA: Perform GSVA for single cell RNA seq☆68Updated last year
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆44Updated last week
- AnnData interoperability in R☆147Updated last week
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 7 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆76Updated 2 months ago
- Unified access to several second-generation deconvolution methods☆89Updated 3 weeks ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆63Updated 3 years ago
- Multiview Intercellular SpaTial modeling framework☆71Updated 2 weeks ago
- A database of useful gene signatures for single-cell analysis☆28Updated 8 months ago
- Profile purification of single-cell spatial transcriptomics data☆27Updated 2 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated last week
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆46Updated 2 years ago
- Latent Embedding Multivariate Regression☆98Updated last year
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆47Updated 4 months ago
- Single Cell Cluster Evaluation☆99Updated 4 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆88Updated 3 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- Accurate and fast cell marker gene identification with COSG☆62Updated last week