10XGenomics / loupeR
Convert Seurat objects to 10x Genomics Loupe files.
☆100Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for loupeR
- A Shiny web app for mapping datasets using Seurat v4☆112Updated 2 weeks ago
- ☆59Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆100Updated 2 months ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆85Updated 3 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆92Updated 5 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆88Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆93Updated 5 months ago
- ☆153Updated 2 months ago
- reticulate-free single cell format conversion☆86Updated last week
- A guide to using a Seurat object in conjunction with RNA Velocity☆132Updated 2 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆123Updated this week
- The integration of single cell rank-based gene set enrichment analysis☆112Updated 3 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆158Updated 3 months ago
- Methods to discover gene programs on single-cell data☆84Updated this week
- scDIOR: Single cell data IO softwaRe☆134Updated 2 years ago
- ☆102Updated 6 months ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆72Updated 4 years ago
- Easy single cell analysis platform for enrichment☆149Updated 2 weeks ago
- Detect doublets in single-cell RNA-seq data☆35Updated 5 years ago
- Gene set scoring for single-cell data☆137Updated 2 weeks ago
- A tool for detecting somatic variants in single cell data☆170Updated 2 months ago
- ☆95Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- R package to visualize gene expression data based on weighted kernel density estimation☆88Updated 8 months ago
- R package for semi-supervised single-cell data integration☆75Updated 9 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆87Updated 11 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆65Updated 4 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆91Updated 11 months ago
- Quantifying metabolism activity at the single-cell resolution☆115Updated 3 months ago
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆44Updated last month