Convert Seurat objects to 10x Genomics Loupe files.
☆148Feb 4, 2026Updated last month
Alternatives and similar repositories for loupeR
Users that are interested in loupeR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BANKSY: spatial clustering☆138Oct 15, 2025Updated 5 months ago
- ☆99Updated this week
- ☆15Aug 17, 2023Updated 2 years ago
- High dimensional weighted gene co-expression network analysis☆468Mar 13, 2026Updated last week
- Interfaces for HDF5-based Single Cell File Formats☆175Nov 4, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Spatial omics analysis toolbox☆365Feb 12, 2026Updated last month
- Inferring CNV from Single-Cell RNA-Seq☆660Nov 14, 2025Updated 4 months ago
- Join subcellular Visium HD bins into cells☆138Nov 4, 2025Updated 4 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆444Jan 22, 2026Updated 2 months ago
- Gene set scoring for single-cell data☆186Feb 11, 2026Updated last month
- Spatial Transcriptomics Capture Location Deconvolution☆203Oct 20, 2025Updated 5 months ago
- A Shiny web app for mapping datasets using Seurat v4☆144Nov 5, 2024Updated last year
- R package to infer biological activities from omics data using a collection of methods.☆286Dec 16, 2025Updated 3 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆41Nov 18, 2025Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆58Jan 2, 2024Updated 2 years ago
- Methods for detecting doublets in single-cell sequencing data☆233Feb 12, 2026Updated last month
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆34Jul 1, 2024Updated last year
- R package implementation of Milo for testing for differential abundance in KNN graphs☆423Sep 4, 2025Updated 6 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆533Mar 21, 2025Updated last year
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆293Mar 5, 2026Updated 3 weeks ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆470Jun 6, 2025Updated 9 months ago
- ☆183May 6, 2025Updated 10 months ago
- A variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics☆11Mar 11, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆67Jul 2, 2025Updated 8 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆293Jun 17, 2025Updated 9 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆567Mar 4, 2026Updated 3 weeks ago
- Fast Wilcoxon and auROC☆206Nov 8, 2024Updated last year
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial dat…☆298Updated this week
- Assessing the purity of single cell population☆143Jun 3, 2022Updated 3 years ago
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆48Sep 29, 2025Updated 5 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆166May 6, 2025Updated 10 months ago
- A package to help convert different single-cell data formats to each other☆460Feb 20, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆183Aug 12, 2025Updated 7 months ago
- AUCell: score single cells with gene regulatory networks☆190Mar 9, 2024Updated 2 years ago
- A toolkit for single-cell immune profiling☆366Mar 9, 2026Updated 2 weeks ago
- ☆446Jan 8, 2026Updated 2 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆154Aug 3, 2025Updated 7 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆74Mar 1, 2026Updated 3 weeks ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆384Jul 30, 2025Updated 7 months ago