10XGenomics / loupeRLinks
Convert Seurat objects to 10x Genomics Loupe files.
☆148Updated 6 months ago
Alternatives and similar repositories for loupeR
Users that are interested in loupeR are comparing it to the libraries listed below
Sorting:
- A Shiny web app for mapping datasets using Seurat v4☆144Updated last year
- ☆120Updated 5 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆121Updated last month
- reticulate-free single cell format conversion☆206Updated last week
- ☆74Updated 2 years ago
- R package for Pathway RespOnsive GENe activity inference☆114Updated 3 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆140Updated 4 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆123Updated last year
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆75Updated 7 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆138Updated 6 months ago
- AUCell: score single cells with gene regulatory networks☆182Updated last year
- scDIOR: Single cell data IO softwaRe☆153Updated 3 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆99Updated 2 years ago
- ☆90Updated 5 months ago
- Gene set scoring for single-cell data☆180Updated 3 months ago
- Create stacked violin plot☆51Updated 3 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆127Updated 8 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆110Updated last year
- Cell types enrichment analysis☆206Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆115Updated 9 months ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆74Updated 4 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆84Updated 4 years ago
- The integration of single cell rank-based gene set enrichment analysis☆144Updated 3 weeks ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆215Updated last month
- CUT&RUN and CUT&Tag data processing and analysis☆113Updated 11 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆113Updated 3 months ago
- ☆202Updated last month
- The official pipeline for flexible and high-performance analysis of DNBelab C Serie single-cell data.☆134Updated 2 weeks ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆88Updated last week
- scGSVA: Perform GSVA for single cell RNA seq☆68Updated last year