lfranzen / spatial-lung-fibrosisLinks
Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcriptomics data presented in our associated manuscript.
☆28Updated 11 months ago
Alternatives and similar repositories for spatial-lung-fibrosis
Users that are interested in spatial-lung-fibrosis are comparing it to the libraries listed below
Sorting:
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆47Updated 5 months ago
- Code for the spatial transcriptomic paper on IPF lungs☆18Updated 11 months ago
- Spatial transcriptomics of heart tissue☆22Updated 3 years ago
- ☆30Updated 4 months ago
- ☆27Updated last year
- Construct Tumor Transition Zone Microenvironment☆44Updated 7 months ago
- ☆20Updated last year
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆30Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆16Updated 3 years ago
- ☆56Updated last year
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated 3 months ago
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆19Updated last year
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆19Updated last year
- ☆17Updated last year
- ☆28Updated 4 months ago
- Codes used in pan-T cell analysis☆59Updated 2 years ago
- ☆50Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- ☆21Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 4 months ago
- ☆30Updated 2 years ago
- ☆13Updated last year
- ☆15Updated 2 years ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆56Updated 2 years ago
- Integration of gut cell atlases☆25Updated 4 months ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- ☆37Updated 2 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆41Updated 2 years ago