lfranzen / spatial-lung-fibrosis
Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcriptomics data presented in our associated manuscript.
☆19Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for spatial-lung-fibrosis
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆33Updated 5 months ago
- ☆53Updated 10 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆24Updated 2 years ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆39Updated last week
- Codes used in pan-T cell analysis☆47Updated last year
- ☆18Updated 5 months ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆32Updated 2 months ago
- R package for pathway analysis in scRNA-seq data☆62Updated 2 months ago
- ☆18Updated 6 months ago
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆14Updated 8 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆20Updated last week
- R code used to analyze single cell PDAC data☆30Updated 4 months ago
- ☆22Updated last week
- ☆17Updated last year
- ☆29Updated 8 months ago
- ☆16Updated 8 months ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆16Updated 2 years ago
- Spatial transcriptomics of heart tissue☆17Updated 2 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆13Updated last year
- R package to detect breakpoints and assign somies to scATAC-seq data☆33Updated 2 months ago
- Single-Cell Inference of Class Switch Recombination☆18Updated 3 months ago
- ☆22Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆25Updated 3 years ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆14Updated last year
- ☆33Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated 3 weeks ago
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆38Updated 4 months ago
- ☆28Updated 2 years ago
- Functions for single cell data analysis☆26Updated 3 years ago
- ☆12Updated last year