lfranzen / spatial-lung-fibrosisLinks
Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcriptomics data presented in our associated manuscript.
☆29Updated last year
Alternatives and similar repositories for spatial-lung-fibrosis
Users that are interested in spatial-lung-fibrosis are comparing it to the libraries listed below
Sorting:
- Code for the spatial transcriptomic paper on IPF lungs☆20Updated last year
- ☆33Updated last year
- ☆25Updated 2 years ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated 9 months ago
- ☆32Updated 10 months ago
- Spatial transcriptomics of heart tissue☆28Updated 3 years ago
- ☆12Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆53Updated 11 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- ☆55Updated last year
- ☆17Updated last year
- ☆22Updated 2 years ago
- ☆32Updated 3 years ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆17Updated 3 years ago
- Construct Tumor Transition Zone Microenvironment☆49Updated 6 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 10 months ago
- ☆48Updated 3 years ago
- R code used to analyze single cell PDAC data☆41Updated last year
- ☆54Updated last year
- ☆53Updated 4 months ago
- ☆14Updated 2 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Single-Cell Inference of Class Switch Recombination☆20Updated last month
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Updated 4 years ago
- ☆34Updated 2 months ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆21Updated 2 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆26Updated last year
- Integration of gut cell atlases☆31Updated 2 months ago
- ☆40Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 4 months ago