saezlab / mistyR
Multiview Intercellular SpaTial modeling framework
☆49Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for mistyR
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆59Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆62Updated 3 months ago
- From geospatial to spatial -omics☆79Updated this week
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆38Updated this week
- ☆64Updated this week
- RNA-velocity informed embeddings for visualizing cellular trajectories☆43Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆57Updated 5 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆64Updated 7 months ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆47Updated last week
- CeLEry: cell location recovery in single-cell RNA sequencing☆31Updated 6 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆56Updated last month
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- ☆46Updated 6 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 2 months ago
- SPATA Package for spatial gene expression analysis☆21Updated 2 years ago
- AnnData interoperability in R☆60Updated last week
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆54Updated 7 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆60Updated last year
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆54Updated last month
- Pan-Cancer Single Cell Classifier☆61Updated 5 months ago
- ☆47Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆66Updated last year
- Unified access to several second-generation deconvolution methods☆57Updated 2 weeks ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆36Updated 2 months ago
- .h5mu files interface for Seurat☆26Updated 11 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆61Updated 2 years ago
- ☆39Updated 3 years ago
- R package for semi-supervised single-cell data integration☆75Updated 9 months ago
- An R package for performing cell typing in SMI and other single cell data☆29Updated 3 months ago
- Analyzing cellular niches in spatial transcriptomics data☆27Updated last week