saezlab / mistyRLinks
Multiview Intercellular SpaTial modeling framework
☆70Updated 4 months ago
Alternatives and similar repositories for mistyR
Users that are interested in mistyR are comparing it to the libraries listed below
Sorting:
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆81Updated 3 years ago
- ☆94Updated last month
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆81Updated this week
- ☆45Updated last week
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆66Updated 3 weeks ago
- From geospatial to spatial -omics☆98Updated last month
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated 4 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 5 months ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆55Updated last week
- Pan-Cancer Single Cell Classifier☆82Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 4 months ago
- Unified access to several second-generation deconvolution methods☆79Updated 2 weeks ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 8 months ago
- Gene group activity utility functions for Scanpy☆93Updated 10 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆159Updated 5 months ago
- AnnData interoperability in R☆119Updated this week
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆80Updated 7 months ago
- Spatial transcriptomics of heart tissue☆96Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- An R package for handling and analysing imaging mass cytometry data☆27Updated this week
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆78Updated 9 months ago
- CAST package☆40Updated 11 months ago
- Multiome GRN inference.☆128Updated last year
- Code for the spatialLIBD R/Bioconductor package and shiny app☆97Updated last month
- ☆41Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago