Alternatives and similar repositories for infercnvpy

Users that are interested in infercnvpy are comparing it to the libraries listed below

• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆166Updated 2 months ago
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆133Updated 8 months ago
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆168Updated 6 months ago
• changwn / scFEA
  single cell Flux Estimation Analysis (scFEA) Try the below web server!
  ☆133Updated last year
• aertslab / scenicplus
  SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…
  ☆236Updated 9 months ago
• dpeerlab / spectra
  Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms
  ☆175Updated last year
• digitalcytometry / cytotrace2
  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
  ☆174Updated 6 months ago
• JEFworks-Lab / STdeconvolve
  Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data
  ☆146Updated 2 months ago
• swolock / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆157Updated 4 years ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆177Updated 2 years ago
• colomemaria / epiScanpy
  Episcanpy: Epigenomics Single Cell Analysis in Python
  ☆147Updated 10 months ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆148Updated 3 years ago
• Teichlab / SpatialDE
  Test genes for Spatial Variation
  ☆176Updated last year
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆111Updated 7 months ago
• digitalcytometry / ecotyper
  EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
  ☆218Updated last year
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆168Updated 2 years ago
• YosefLab / Compass
  In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
  ☆117Updated this week
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆211Updated 2 months ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆188Updated this week
• scverse / decoupler
  Python package to perform enrichment analysis from omics data.
  ☆229Updated this week
• saezlab / liana-py
  LIANA+: an all-in-one framework for cell-cell communication
  ☆241Updated last week
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆191Updated last month
• YMa-lab / CARD
  ☆126Updated last year
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆221Updated last year
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆215Updated last year
• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆155Updated last month
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆171Updated last year
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆119Updated last year
• theislab / diffxpy
  Differential expression analysis for single-cell RNA-seq data.
  ☆204Updated this week
• navinlabcode / CellTrek
  ☆125Updated 3 years ago