feiyoung / PRECAST
an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batch effects.
☆10Updated last year
Alternatives and similar repositories for PRECAST:
Users that are interested in PRECAST are comparing it to the libraries listed below
- Methods for visualization and analysis of spatially-resolved gene expression☆17Updated last week
- ☆25Updated 5 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆34Updated 2 months ago
- ☆12Updated last month
- ☆26Updated last year
- ☆26Updated 6 months ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆20Updated 4 months ago
- Conditional Autoencoders for Multiplexed Pixel Analysis☆15Updated 2 years ago
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆14Updated last month
- CAST package☆34Updated 5 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 7 months ago
- The Single-Cell Pathology Landscape of Breast Cancer☆26Updated 5 years ago
- ☆47Updated 3 weeks ago
- Supervised cell type identification for scATAC-seq data☆13Updated last year
- Alignment of spatial genomics data using deep Gaussian processes☆27Updated 2 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- ☆11Updated 2 months ago
- ☆21Updated 2 years ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆18Updated 4 months ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆27Updated last week
- ☆54Updated last year
- A python package for learning mutational signatures and their multidimensional genomic properties☆14Updated 4 years ago
- Spatial direct messaging detected by bivariate Moran☆26Updated 3 months ago
- A public MuSpAn page for community discussions and issue reporting.☆10Updated 2 weeks ago
- Code, data and analysis for moslin.☆12Updated 6 months ago
- Image processing pipeline for spatial projects☆15Updated last year
- Bayesian model for RNA velocity estimation of periodic manifolds☆32Updated 9 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆35Updated last week
- Spatially-resolved Transcriptomics via Epitope Anchoring☆18Updated last year
- Statistical analysis for spatial omics data☆10Updated 2 years ago