feiyoung / PRECASTLinks
an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batch effects.
☆10Updated last year
Alternatives and similar repositories for PRECAST
Users that are interested in PRECAST are comparing it to the libraries listed below
Sorting:
- Supervised cell type identification for scATAC-seq data☆13Updated last year
- Methods for visualization and analysis of spatially-resolved gene expression☆19Updated last week
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 3 months ago
- ☆25Updated 5 years ago
- ☆26Updated last year
- CAST package☆40Updated 7 months ago
- ☆24Updated last year
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆21Updated last month
- ☆17Updated last year
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆20Updated 6 months ago
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆16Updated 2 weeks ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 6 months ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆19Updated last year
- ☆27Updated 7 months ago
- ☆55Updated last year
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆10Updated 6 months ago
- Spatial direct messaging detected by bivariate Moran☆26Updated last month
- ☆27Updated last year
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- Code, data and analysis for moslin.☆12Updated 7 months ago
- The Single-Cell Pathology Landscape of Breast Cancer☆26Updated 5 years ago
- ☆13Updated last year
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆18Updated 2 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 3 months ago
- ☆11Updated 5 months ago
- ☆23Updated 2 months ago
- ☆21Updated 2 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆35Updated 11 months ago
- Spatial RNA velocity☆10Updated 8 months ago