feiyoung / PRECAST
an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batch effects.
☆10Updated last year
Alternatives and similar repositories for PRECAST:
Users that are interested in PRECAST are comparing it to the libraries listed below
- The Single-Cell Pathology Landscape of Breast Cancer☆26Updated 5 years ago
- Methods for visualization and analysis of spatially-resolved gene expression☆17Updated this week
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆12Updated last week
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆20Updated 3 months ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆18Updated 3 months ago
- ☆25Updated 5 years ago
- ☆22Updated last week
- CAST package☆32Updated 5 months ago
- A python package for learning mutational signatures and their multidimensional genomic properties☆14Updated 4 years ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆27Updated last year
- ☆53Updated 11 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆34Updated last month
- Multi-slice Spatial Transcriptome Domain Analysis.☆11Updated 3 months ago
- ☆46Updated 2 weeks ago
- ☆17Updated 11 months ago
- Alignment of spatial genomics data using deep Gaussian processes☆27Updated 2 years ago
- ☆25Updated 5 months ago
- ☆26Updated last year
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆10Updated 11 months ago
- Supervised cell type identification for scATAC-seq data☆13Updated last year
- ☆16Updated 7 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆12Updated 11 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 3 weeks ago
- ☆26Updated last year
- ☆21Updated 2 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 5 months ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆18Updated 2 years ago
- Spatial RNA velocity☆10Updated 5 months ago
- Conditional Autoencoders for Multiplexed Pixel Analysis☆15Updated 2 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆10Updated 5 months ago