YosefLab / ImpulseDE2Links
☆39Updated 3 years ago
Alternatives and similar repositories for ImpulseDE2
Users that are interested in ImpulseDE2 are comparing it to the libraries listed below
Sorting:
- binned motif enrichment analysis and visualisation☆41Updated this week
- Identify and correct invalid gene symbols☆59Updated 9 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆77Updated 6 months ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆90Updated 6 months ago
- An R interface to the MEME Suite☆52Updated 3 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 6 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 8 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 11 months ago
- An R package to analyze single-cell V(D)J data☆28Updated last year
- A toolkit for working with ATAC-seq data.☆24Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Docker container for genomics analyses in R.☆25Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- R package containing useful functions for mutational signature analysis☆84Updated last week
- Detecting intron retention from RNA-Seq experiments☆55Updated last year