linnarsson-lab / ceftoolsLinks
DEPRECATED Tools for manipulating cell expression format (CEF) files
☆12Updated 8 years ago
Alternatives and similar repositories for ceftools
Users that are interested in ceftools are comparing it to the libraries listed below
Sorting:
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 7 years ago
- Normalization for single cell RNA-seq data☆50Updated 7 months ago
- Single-CELL rna-seq analysis software☆39Updated 8 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 9 months ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Updated 4 years ago
- An R package for inferring the subclonal architecture of tumors☆121Updated 2 years ago
- bradner lab computation pipeline scripts☆54Updated 4 months ago
- An R client for broads firehose pipeline, providing TCGA data sets☆61Updated 6 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- Collection of CGAT NGS Pipelines☆43Updated 7 years ago
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- a pipeline for single cell RNA-seq data analysis☆67Updated 2 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Updated 9 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 2 months ago
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- ☆15Updated 2 years ago
- ☆55Updated 10 months ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year