A software package for analyzing snapshots of developmental processes
☆166Sep 15, 2022Updated 4 years ago
Alternatives and similar repositories for wot
Users that are interested in wot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Jul 28, 2023Updated 3 years ago
- Global Waddington-OT☆23Mar 25, 2025Updated last year
- Single-cell Orientation Tracing☆21Jan 23, 2022Updated 4 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆57Jan 20, 2025Updated last year
- Multithreaded Gephi Force Atlas2 Layout in 2 or 3-d☆24May 8, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Population balance analysis☆47Apr 25, 2019Updated 7 years ago
- ☆27Mar 31, 2026Updated 7 months ago
- RNA velocity estimation in Python☆177Oct 7, 2025Updated last year
- Developmental Spatiotemporal Optimal Transport☆15Mar 19, 2025Updated last year
- Preprocessing pipeline for (sc)ATAC data☆10Feb 22, 2022Updated 4 years ago
- TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics☆139Aug 19, 2024Updated 2 years ago
- ☆12Aug 24, 2019Updated 7 years ago
- CellRank: dynamics from multi-view single-cell data☆459Updated this week
- ☆18Aug 14, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆249May 23, 2020Updated 6 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆19Jun 25, 2020Updated 6 years ago
- manifold metric and correction techniques for (Bayesian) GPLVM from GPy☆12Mar 1, 2020Updated 6 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆49Jul 20, 2022Updated 4 years ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆510Oct 15, 2026Updated 3 weeks ago
- URD - Reconstruction of Branching Developmental Trajectories☆128Jun 29, 2021Updated 5 years ago
- Dynamic inference from single-cell snapshots by optimal transport☆21Mar 14, 2024Updated 2 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆674Oct 15, 2026Updated 3 weeks ago
- Deposited codes for snMultiome in human cortex manuscript☆14Aug 12, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Deep probabilistic analysis of single-cell and spatial omics data☆1,722Updated this week
- ☆18Mar 31, 2026Updated 7 months ago
- RNA Velocity generalized through dynamical modeling☆515Feb 25, 2026Updated 8 months ago
- Regulatory networks with Direct Information☆19Oct 14, 2019Updated 7 years ago
- ☆62Mar 18, 2026Updated 7 months ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 6 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆186Jun 24, 2021Updated 5 years ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆428Sep 12, 2026Updated last month
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆11Jul 5, 2021Updated 5 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 3 years ago
- ☆134Nov 17, 2023Updated 2 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆501Apr 5, 2024Updated 2 years ago
- ☆27Apr 18, 2018Updated 8 years ago
- This is the alpha version of the CellOracle package☆507Apr 30, 2026Updated 6 months ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆469Feb 18, 2025Updated last year