Alternatives and similar repositories for wot

Users that are interested in wot are comparing it to the libraries listed below

• theislab / paga
  Mapping out the coarse-grained connectivity structures of complex manifolds.
  ☆215Updated 4 years ago
• klarman-cell-observatory / scPhere
  ☆100Updated 2 years ago
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆110Updated 6 months ago
• rajewsky-lab / novosparc
  ☆130Updated last year
• velocyto-team / velocyto.py
  RNA velocity estimation in Python
  ☆169Updated 2 weeks ago
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆72Updated last year
• Teichlab / bbknn
  Batch balanced KNN
  ☆160Updated last year
• zcang / SpaOTsc
  ☆45Updated 2 years ago
• dynverse / dyngen
  Simulating single-cell data using gene regulatory networks 📠
  ☆73Updated last year
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆68Updated 2 years ago
• tanaylab / metacells
  Metacells - Single-cell RNA Sequencing Analysis
  ☆106Updated 7 months ago
• asncd / MIMOSCA
  A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
  ☆87Updated 5 years ago
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆61Updated last year
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆81Updated 6 months ago
• aertslab / cisTopic
  cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
  ☆139Updated last year
• theislab / moscot
  Multi-omic single-cell optimal transport tools
  ☆154Updated this week
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆107Updated 7 months ago
• mohuangx / SAVER
  Single-cell RNA-seq Gene Expression Recovery
  ☆110Updated 5 months ago
• romain-lopez / scVI-reproducibility
  Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"
  ☆57Updated 6 years ago
• chriscainx / mnnpy
  An implementation of MNN (Mutual Nearest Neighbors) correct in python.
  ☆74Updated 2 years ago
• Murali-group / Beeline
  BEELINE: evaluation of algorithms for gene regulatory network inference
  ☆187Updated 3 months ago
• scverse / pertpy
  Perturbation Analysis in the scverse ecosystem.
  ☆174Updated this week
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆137Updated last year
• mossjacob / pyslingshot
  Python implementation of the Slingshot pseudotime algorithm
  ☆60Updated last year
• colomemaria / epiScanpy
  Episcanpy: Epigenomics Single Cell Analysis in Python
  ☆144Updated 5 months ago
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆158Updated last month
• dynverse / dynbenchmark
  Comparison of methods for trajectory inference on single-cell data 🥇
  ☆206Updated last year
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆34Updated 11 months ago
• LuyiTian / sc_mixology
  This contains the dataset for comparing scRNA-seq analysis methods
  ☆92Updated 4 years ago
• califano-lab / ARACNe-AP
  Network Reverse Engineering through AP inference of Mutual Information
  ☆86Updated 2 years ago