Alternatives and similar repositories for ClusterMap

Users that are interested in ClusterMap are comparing it to the libraries listed below

• dbrg77 / plate_scATAC-seq
  A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method
  ☆43Updated 4 years ago
• adoostparast / CellR
  CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq
  ☆18Updated 4 years ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆45Updated last year
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆45Updated last year
• LTLA / batchelor
  Clone of the Bioconductor repository for the batchelor package.
  ☆16Updated 2 months ago
• neurorestore / DE-analysis
  ☆39Updated 3 years ago
• shenorrLabTRDF / cellAlign
  ☆41Updated 4 years ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆38Updated 3 years ago
• wzthu / esATAC
  Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis
  ☆23Updated 2 years ago
• massonix / tabula_muris_networks
  R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)
  ☆12Updated 3 years ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆40Updated 2 years ago
• cole-trapnell-lab / monocle2-rge-paper
  Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)
  ☆29Updated 4 years ago
• broadinstitute / BipolarCell2016
  ☆22Updated 5 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• ggjlab / scHCL
  ☆47Updated 5 years ago
• lanagarmire / SSrGE
  ☆34Updated 5 years ago
• crazyhottommy / pyflow-cellranger
  A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data
  ☆16Updated 5 years ago
• veltenlab / rnamagnet
  ☆25Updated 3 years ago
• broadinstitute / gtex-single-nucleus-reference
  Code repository for the snRNA-seq cross-tissue atlas project
  ☆20Updated 3 years ago
• dgrun / RaceID
  Algorithm for the inference of cell types from single-cell RNA-seq data.
  ☆44Updated 9 years ago
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 2 years ago
• pachterlab / NYMP_2018
  ☆28Updated 6 years ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 5 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆60Updated 2 years ago
• soedinglab / merlot
  Reconstruct the lineage topology of a scRNA-seq differentiation dataset.
  ☆18Updated 4 years ago
• amcdavid / CellaRepertorium
  Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)
  ☆15Updated 3 years ago
• WeiqiangZhou / BIRD
  Big data Regression for predicting DNase I hypersensitivity
  ☆30Updated 9 months ago
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆48Updated 7 months ago
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆51Updated last year
• wenweixiong / MARVEL
  ☆49Updated 10 months ago