broadinstitute / single_cell_analysisLinks
Documents used for workshops on single cell analysis
☆27Updated 8 years ago
Alternatives and similar repositories for single_cell_analysis
Users that are interested in single_cell_analysis are comparing it to the libraries listed below
Sorting:
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- ☆34Updated 6 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 11 months ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 6 years ago
- Single-CELL rna-seq analysis software☆39Updated 7 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 6 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆22Updated 5 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- ☆55Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Single Cell Analysis Automated Workflow☆27Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- ☆28Updated 6 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- ☆41Updated 7 years ago
- An R package to analyze single-cell V(D)J data☆28Updated last year
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago