broadinstitute / single_cell_analysis
Documents used for workshops on single cell analysis
☆27Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for single_cell_analysis
- ☆33Updated 5 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 5 months ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated last year
- Figure depicting the breadth of multimodal scRNA-seq technologies☆15Updated 5 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆19Updated 6 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 2 months ago
- chia pet analysis software☆25Updated 5 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated 10 months ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆41Updated 2 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated last year
- ☆40Updated 6 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 5 years ago
- GTEx analysis scripts☆20Updated 7 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- ☆53Updated 3 weeks ago
- Scripts to import your FeatureCounts output into DEXSeq☆30Updated 6 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆29Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆69Updated 5 months ago
- Scripts to install as a Bioconda package for making workflows☆17Updated last month