broadinstitute / single_cell_analysis
Documents used for workshops on single cell analysis
☆27Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for single_cell_analysis
- ☆33Updated 5 years ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 5 months ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆19Updated 6 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated last year
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 5 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- <<------ Use SnapATAC!!☆25Updated 5 years ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆26Updated 4 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 7 years ago
- R package with motifs for use with chromVAR☆25Updated 7 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆41Updated 2 years ago
- BAGEL software☆26Updated 9 months ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 2 months ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 7 years ago
- ☆29Updated 5 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- Pipeline for SpatialTranscriptomics and 10X Visium data☆21Updated 3 months ago
- GTEx analysis scripts☆20Updated 7 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- ☆12Updated 4 years ago