broadinstitute / single_cell_analysis
Documents used for workshops on single cell analysis
☆27Updated 8 years ago
Alternatives and similar repositories for single_cell_analysis:
Users that are interested in single_cell_analysis are comparing it to the libraries listed below
- ☆33Updated 5 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 6 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 7 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated 3 weeks ago
- ☆22Updated 6 years ago
- ATAC-seq lab for BIOINF545☆25Updated last month
- R package with motifs for use with chromVAR☆25Updated 7 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- ☆53Updated last month
- ☆28Updated 6 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 2 weeks ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- chia pet analysis software☆25Updated 6 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- R code for single-cell analysis of intestinal epithelial cells☆22Updated 7 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago