Vivianstats / scImputeView external linksLinks
Accurate and robust imputation of scRNA-seq data
☆98Aug 21, 2019Updated 6 years ago
Alternatives and similar repositories for scImpute
Users that are interested in scImpute are comparing it to the libraries listed below
Sorting:
- Single-cell RNA-seq Gene Expression Recovery☆115Nov 28, 2024Updated last year
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆378Oct 3, 2024Updated last year
- ☆19Jun 13, 2019Updated 6 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- Imputing dropout events in single-cell RNA-sequencing data☆18Dec 7, 2020Updated 5 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- Deep count autoencoder for denoising scRNA-seq data☆268Mar 21, 2024Updated last year
- benchmark for single-cell RNA-seq imputation methods☆29Mar 16, 2024Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆96Nov 24, 2020Updated 5 years ago
- Python Implementation of SIMLR for single-cell visualization and analysis☆24Jul 28, 2022Updated 3 years ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆89Jan 31, 2022Updated 4 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆169Jan 26, 2024Updated 2 years ago
- ☆62May 21, 2025Updated 8 months ago
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 5 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Jun 22, 2022Updated 3 years ago
- Simple simulation of single-cell RNA sequencing data☆234Jan 12, 2026Updated last month
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Feb 8, 2019Updated 7 years ago
- Clustering through Imputation and Dimensionality Reduction☆63Sep 21, 2017Updated 8 years ago
- R package for benchmarking single cell analysis methods☆32Oct 4, 2023Updated 2 years ago
- Normalization for single cell RNA-seq data☆51Jun 11, 2025Updated 8 months ago
- A study to compare methods for clustering of scRNA-seq data☆45Jul 19, 2024Updated last year
- Cloud-based scalable and efficient single-cell genomics workflows☆68Jan 23, 2026Updated 3 weeks ago
- Tools and methods for analysis of single cell assay data in R☆260Oct 17, 2025Updated 3 months ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆34Mar 24, 2022Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Oct 15, 2020Updated 5 years ago
- sake☆29Feb 8, 2023Updated 3 years ago
- Biclustering algorithm☆58Dec 11, 2017Updated 8 years ago
- Scripts for data and figure generation in SAVER paper☆17Jan 5, 2021Updated 5 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Nov 9, 2023Updated 2 years ago
- ☆41Jun 24, 2025Updated 7 months ago
- a pipeline for single cell RNA-seq data analysis☆67Dec 11, 2023Updated 2 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆92Aug 26, 2020Updated 5 years ago
- Batch balanced KNN☆177Oct 11, 2023Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated 11 months ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆43Feb 3, 2023Updated 3 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆110Dec 16, 2022Updated 3 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆87Sep 17, 2025Updated 4 months ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆40Apr 15, 2021Updated 4 years ago
- Code to support: "pcaReduce: hierarchical clustering of single cell transcriptional profiles"☆20Feb 24, 2024Updated last year