Vivianstats / scImpute
Accurate and robust imputation of scRNA-seq data
☆95Updated 5 years ago
Alternatives and similar repositories for scImpute
Users that are interested in scImpute are comparing it to the libraries listed below
Sorting:
- Single-cell RNA-seq Gene Expression Recovery☆110Updated 5 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆74Updated last year
- This contains the dataset for comparing scRNA-seq analysis methods☆92Updated 4 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- ☆46Updated 3 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆61Updated 3 years ago
- Code for the MNN manuscript figures☆50Updated 6 years ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆111Updated 6 months ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- Single-Cell Clustering Assessment Framework☆101Updated last year
- A benchmark of batch-effect correction methods for single-cell RNA sequencing data☆74Updated 3 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 3 weeks ago
- ☆55Updated 6 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆139Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆91Updated 2 years ago
- ☆130Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- ☆85Updated 4 years ago
- ☆68Updated 7 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆43Updated 5 years ago
- Geometry-preserving random sampling☆81Updated 6 months ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆147Updated 3 months ago
- ☆53Updated 2 months ago
- R package to access DoRothEA's regulons☆147Updated last year
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆87Updated 5 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆59Updated last year
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆41Updated last year