StoreyLab / superSeq
Assessing the increase in power from increasing read depth in a given RNA-Seq study
☆13Updated 5 years ago
Alternatives and similar repositories for superSeq:
Users that are interested in superSeq are comparing it to the libraries listed below
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 7 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 3 weeks ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆26Updated last year
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated 3 weeks ago
- Integrating zingeR with ZINB-WaVE weights☆23Updated 6 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated last month
- ☆28Updated 6 months ago
- Gene-level general linear mixed model☆19Updated 3 months ago
- A tidy interface for coverage analysis☆24Updated 4 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 3 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 10 months ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated last year
- Toolkit for QTL mapping and meta-analysis.☆16Updated 2 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- R package for benchmarking single cell analysis methods☆30Updated last year
- Save and load your R sessions faster using parallel compression☆25Updated 5 years ago
- DESeq2 or edgeR☆22Updated 8 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Clone of the Bioconductor repository for the basilisk package.☆27Updated 2 months ago
- ☆20Updated 2 weeks ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 2 years ago
- Dimensionality reduction and batch integration methods for single cell data☆16Updated last year
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆23Updated last year
- Pairwise Hierarchical Model☆14Updated 2 years ago
- Read HOMER motif analysis output in R.☆15Updated 6 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 5 years ago