ws6 / deindexerLinks
an easy deindex tool for illumina multiple barcodes sequencing
☆12Updated 10 years ago
Alternatives and similar repositories for deindexer
Users that are interested in deindexer are comparing it to the libraries listed below
Sorting:
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Filters for false-positive mutation calls in NGS☆32Updated 6 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 6 years ago
- Normalization for single cell RNA-seq data☆48Updated 2 months ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 2 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Updated 11 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Analysis from kallisto paper☆32Updated 9 years ago
- High-definition reconstruction of clonal composition from next-generation sequencing data☆41Updated 9 years ago
- DEPRECATED Tools for manipulating cell expression format (CEF) files☆12Updated 7 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Fast fusion detection using kallisto☆80Updated 2 months ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 7 years ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Updated 5 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Single-CELL rna-seq analysis software☆39Updated 7 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Tumor Heterogeneity Analysis (THetA) and THetA2 are algorithms that estimate the tumor purity and clonal/subclonal copy number aberration…☆73Updated 4 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- ☆35Updated 4 years ago