Predict cell cycle phase in a continuum from single-cell RNA-seq data
☆14Nov 14, 2020Updated 5 years ago
Alternatives and similar repositories for peco
Users that are interested in peco are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆50Jul 20, 2022Updated 3 years ago
- Various Ideas for Confounder Adjustment in Regression☆24May 8, 2023Updated 3 years ago
- ☆15Jun 3, 2019Updated 7 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆33Jan 15, 2021Updated 5 years ago
- ☆14Jun 12, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code and analyses from "FDR: A New Deal" paper☆15Apr 18, 2017Updated 9 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Sep 17, 2020Updated 5 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆14Aug 22, 2017Updated 8 years ago
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆12Sep 25, 2017Updated 8 years ago
- Analysis of single cell RNA-Seq data from Veres et al.☆13Dec 10, 2019Updated 6 years ago
- Build predicted cell-cell interaction networks from single-cell data.☆10Jan 31, 2023Updated 3 years ago
- Integrating zingeR with ZINB-WaVE weights☆26Feb 15, 2018Updated 8 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated 2 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Apr 11, 2023Updated 3 years ago
- ☆10Aug 12, 2018Updated 7 years ago
- Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data☆28Feb 4, 2017Updated 9 years ago
- R package for fast maximum-likelihood estimation of mixture proportions using SQP.☆11Dec 21, 2023Updated 2 years ago
- Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set☆17Aug 9, 2019Updated 6 years ago
- Scripts to reproduce analyses of tradeSeq paper.☆16Feb 5, 2020Updated 6 years ago
- Repo for Dynamic Statistical Comparisons project☆13Feb 5, 2024Updated 2 years ago
- Effective Computing—Resources for Computational Biologists☆26Apr 17, 2020Updated 6 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆12Sep 25, 2017Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- GitHub template repository for creating new barebones Nextflow pipelines, using the Arcadia-Science/nextflow-template cookiecutter templa…☆13Mar 21, 2023Updated 3 years ago
- UChicago BSD Quantitative Bootcamp 2020☆10Sep 1, 2021Updated 4 years ago
- ☆15Jan 13, 2021Updated 5 years ago
- Single cell RNA Seq data analysis with quantitative phenotypes☆13Nov 17, 2020Updated 5 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆31Jun 14, 2022Updated 4 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆19Jun 29, 2022Updated 3 years ago
- A set of tools for R that enhance reproducibility beyond package management☆39Updated this week
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆29May 15, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆19Mar 27, 2021Updated 5 years ago
- Inference of switch-like differential expression along single-cell trajectories☆22Oct 24, 2017Updated 8 years ago
- Population balance analysis☆46Apr 25, 2019Updated 7 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆17Jul 15, 2015Updated 10 years ago
- R implementation of MULTI-seq sample classification workflow☆66Nov 22, 2023Updated 2 years ago
- Trajectory inference and differential expression over multiple conditions in scRNA-seq☆26Apr 22, 2021Updated 5 years ago
- R package for Empirical Bayes Factor Analysis.☆53Dec 4, 2024Updated last year