Predict cell cycle phase in a continuum from single-cell RNA-seq data
☆14Nov 14, 2020Updated 5 years ago
Alternatives and similar repositories for peco
Users that are interested in peco are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated 2 years ago
- ☆15Jun 3, 2019Updated 7 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆49Jul 20, 2022Updated 4 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆14Aug 22, 2017Updated 9 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆33Jan 15, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Build predicted cell-cell interaction networks from single-cell data.☆10Jan 31, 2023Updated 3 years ago
- Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data☆29Feb 4, 2017Updated 9 years ago
- Various Ideas for Confounder Adjustment in Regression☆24May 8, 2023Updated 3 years ago
- Integrating zingeR with ZINB-WaVE weights☆27Feb 15, 2018Updated 8 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆12Sep 25, 2017Updated 9 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆19Mar 27, 2021Updated 5 years ago
- Normalization for single cell RNA-seq data☆11Aug 25, 2022Updated 4 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆32Jun 14, 2022Updated 4 years ago
- Code and analyses from "FDR: A New Deal" paper☆15Apr 18, 2017Updated 9 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Inference of switch-like differential expression along single-cell trajectories☆23Oct 24, 2017Updated 8 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆30May 15, 2024Updated 2 years ago
- Single-cell RNA-seq analysis of human germline cells and their niche cells☆11Jun 6, 2017Updated 9 years ago
- Weighted gene co-expression network analysis for scRNA-seq data in Seurat☆10Dec 15, 2023Updated 2 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆11Sep 17, 2020Updated 6 years ago
- Analysis of single cell RNA-Seq data from Veres et al.☆14Dec 10, 2019Updated 6 years ago
- Single Cell RNA-seq UMI Filtering Facilitator☆10Oct 6, 2025Updated last year
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆13Sep 25, 2017Updated 9 years ago
- R package to fit Empirical Bayes Normal Means model.☆14Dec 3, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Analysis of Single Cell Expression, Normalization and Differential expression☆14Feb 29, 2020Updated 6 years ago
- An Automated RNASeq Analysis Pipeline (Differential expression to gene enrichment)☆10Oct 25, 2021Updated 4 years ago
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 9 years ago
- An R package implementing Mr.ASH method☆13Oct 31, 2023Updated 2 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆15Jun 5, 2019Updated 7 years ago
- R implementation of MULTI-seq sample classification workflow☆66Nov 22, 2023Updated 2 years ago
- ☆10Aug 12, 2018Updated 8 years ago
- R package for bayesNMf, a computationally efficient Gibbs sampler for Bayesian Poisson NMF which automatically determines the number of l…☆12Oct 26, 2025Updated 11 months ago
- Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set☆17Aug 9, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast and Scalable Single Cell Differential Expression Analysis using Mixed-effects Models☆13Apr 8, 2026Updated 6 months ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆45Mar 31, 2026Updated 6 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆15May 2, 2019Updated 7 years ago
- R package for fast maximum-likelihood estimation of mixture proportions using SQP.☆11Dec 21, 2023Updated 2 years ago
- workflowr project for exploring the 2016 Divvy trip data.☆15Jul 14, 2020Updated 6 years ago
- Deconvolution of seed effects from gene effects in large scale RNAi screens☆13May 18, 2018Updated 8 years ago
- Scripts to reproduce analyses of tradeSeq paper.☆17Feb 5, 2020Updated 6 years ago