Alternatives and similar repositories for GrandPrix

Users that are interested in GrandPrix are comparing it to the libraries listed below

• architverma1 / tGPLVM
  tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data
  ☆17Updated 6 years ago
• YosefLab / SymSim
  ☆26Updated 9 months ago
• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated 8 months ago
• bioFAM / slalom
  ☆29Updated 2 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 4 years ago
• canzarlab / JVis-learn
  ☆20Updated 4 years ago
• yanailab / knn-smoothing
  K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
  ☆55Updated 2 years ago
• KenLauLab / DR-structure-preservation
  A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques
  ☆16Updated 4 years ago
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆23Updated 4 years ago
• de-Boer-Lab / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆27Updated 2 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 6 years ago
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆16Updated 5 years ago
• chenlingantelope / HarmonizationSCANVI
  Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper
  ☆13Updated 2 years ago
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 3 years ago
• yanailab / enhance
  ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)
  ☆14Updated 6 years ago
• mohuangx / SAVER-paper
  Scripts for data and figure generation in SAVER paper
  ☆17Updated 4 years ago
• Oshlack / splatter-paper
  Data and analysis for the Splatter paper
  ☆29Updated 7 years ago
• andrewcharlesjones / cplvm
  Contrastive Poisson latent variable models (CPLVMs)
  ☆11Updated 3 years ago
• cole-trapnell-lab / cicero
  ☆12Updated last year
• lingfeiwang / findr
  Fast Inference of Networks from Directed Regulations
  ☆22Updated last year
• hhcho / netsne
  ☆21Updated 6 years ago
• kieranrcampbell / ouija
  Descriptive probabilistic marker gene approach to single-cell pseudotime inference
  ☆29Updated 5 years ago
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆72Updated 2 years ago
• klarman-cell-observatory / sc_eVIP
  Variant impact phenotyping using Perturb-seq
  ☆9Updated last year
• audreyqyfu / LATE
  Imputation of single cell RNA-sequencing data with autoencoder
  ☆16Updated 4 years ago
• praneet1988 / Inferring-and-Visualizing-RNA-Velocity-in-Bulk-RNA-SEQ
  Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.
  ☆16Updated 5 years ago
• lingxuez / URSM
  A Unified RNA Sequencing Model (URSM) for joint analysis of single cell and bulk RNA-seq data.
  ☆11Updated 7 years ago
• seasamgo / rescue
  Bootstrap imputation for scRNAseq data
  ☆12Updated 4 years ago
• mhu10 / scPanoView
  ☆11Updated 5 years ago