ManchesterBioinference / GrandPrixLinks
GrandPrix
☆16Updated 6 years ago
Alternatives and similar repositories for GrandPrix
Users that are interested in GrandPrix are comparing it to the libraries listed below
Sorting:
- ☆26Updated last year
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆16Updated 4 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆59Updated 3 years ago
- pCMF R package☆14Updated 6 years ago
- Variational autoencoder for single cell RNA-seq datasets☆44Updated 8 years ago
- ☆48Updated 6 years ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- ☆29Updated 2 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆76Updated 3 months ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Updated 3 years ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆56Updated 7 years ago
- Scripts for data and figure generation in SAVER paper☆17Updated 4 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 6 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆28Updated 4 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- Simulating single-cell data using gene regulatory networks 📠☆78Updated last year
- Population balance analysis☆44Updated 6 years ago
- Python code for genetic marker selection using linear programming☆42Updated last year
- ☆56Updated 5 years ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆18Updated 3 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- ☆11Updated 5 years ago
- SemI-SUpervised generative Autoencoder models for single cell data☆18Updated 4 years ago
- ☆20Updated 4 years ago
- A simulator for single-cell expression data guided by gene regulatory networks☆72Updated last year
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- ☆16Updated 3 years ago