AllonKleinLab / PBALinks
Population balance analysis
☆44Updated 6 years ago
Alternatives and similar repositories for PBA
Users that are interested in PBA are comparing it to the libraries listed below
Sorting:
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆46Updated 6 years ago
- This is the code release for paper Continuous State HMMs for Modeling Time Series Single Cell RNA-Seq Data☆23Updated 7 years ago
- Geometry-preserving random sampling☆95Updated last year
- scNMT-seq gastrulation☆42Updated 2 years ago
- Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Lars…☆39Updated last year
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated 3 weeks ago
- ☆59Updated last year
- ☆37Updated 9 months ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆78Updated 3 weeks ago
- ☆28Updated 6 years ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆54Updated last year
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆18Updated 5 years ago
- A method for analyzing scATAC-seq experiments.☆34Updated 6 months ago
- The Self-Assembling-Manifold (SAM) algorithm.☆45Updated this week
- ☆34Updated 6 years ago
- ☆43Updated 2 years ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆97Updated 3 weeks ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Single-cell RNA-seq Gene Expression Recovery☆112Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- supporting code for the multinomial single cell RNA-Seq paper☆53Updated 4 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- ☆45Updated last month
- Clone identification from single-cell data☆61Updated 3 years ago
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequenc…☆31Updated 7 months ago
- Benchmark of GRNs using the GRETA pipeline☆30Updated last week